Abbasi Montazeri E, Seyed-Mohammadi S, Asarehzadegan Dezfuli A, Khosravi AD, Dastoorpoor M, Roointan M, Saki M (2020) Investigation of SCC mec types I-IV in clinical isolates of methicillin-resistant coagulase-negative staphylococci in Ahvaz. Southwest Iran. Biosci Rep 40:BSR20200847
Article
PubMed
Google Scholar
Ahn JS, Seo SI, Kim J, Kim T, Kang JG, Kim HS, Shin WG, Jang MK, Kim HY (2020) Efficacy of stool multiplex polymerase chain reaction assay in adult patients with acute infectious diarrhea. World J Clin Cases 8:3708
Article
PubMed
PubMed Central
Google Scholar
Alimolaei M, Rahimi HR, Ezatkhah M, Bafti MS, Afzali S (2019) Prevalence, characteristics and antimicrobial susceptibility patterns of Clostridioides difficile isolated from hospitals in Iran. J Glob Antimicrob Resist 19:22–27
Article
PubMed
Google Scholar
Bagdasarian N, Rao K, Malani PN (2015) Diagnosis and treatment of Clostridioides difficile in adults. JAMA 313:398–408
Article
PubMed
PubMed Central
Google Scholar
Baghani A, Mesdaghinia A, Kuijper EJ, Aliramezani A, Talebi M, Douraghi M (2020) High prevalence of Clostridiodes diffiicle PCR ribotypes 001 and 126 in Iran. Sci Rep 10:1–9
Article
Google Scholar
Tille P. Bailey & Scott’s Diagnostic Microbiology-E-Book (2015) St Louis, Elsevier Health Sciences
Burnham CA, Carroll KC (2013) Diagnosis of Clostridium difficile infection: an ongoing conundrum for clinicians and for clinical laboratories. Clin Microbiol Rev 26:604
Article
CAS
PubMed
PubMed Central
Google Scholar
Chen S, Gu H, Sun C, Wang H, Wang J (2017) Rapid detection of Clostridioides difficile toxins and laboratory diagnosis of Clostridioides difficile infections. Infection 45:255–262
Article
CAS
PubMed
Google Scholar
Chung HS, Park JS, Shin BM (2019) Laboratory diagnosis of Clostridium difficile infection in Korea: the first national survey. Ann Lab Med 39:317–321
Article
PubMed
PubMed Central
Google Scholar
Czepiel J, Dróżdż M, Pituch H, Kuijper EJ, Perucki W, Mielimonka A, Goldman S, Wultańska D, Garlicki A, Biesiada G (2019) Clostridium difficile infection. Eur J Clin Microbiol 38:1211–1221
Article
CAS
Google Scholar
Doing KM, Hintz MS (2012) Prospective evaluation of the Meridian Illumigene™ loop-mediated amplification assay and the Gen Probe ProGastro™ Cd polymerase chain reaction assay for the direct detection of toxigenic Clostridium difficile from fecal samples. Diagn Microbiol Infect Dis 72:8–13
Article
CAS
PubMed
Google Scholar
Ejikeugwu C, Saki M, Nwakaeze E, Eze P, Chinedu O, Carissa D, Edeh C, Esimone C, Iroha I, Adikwu M (2019) Characterization of metallo-β-lactamases-encoding genes blaIMP-1 and blaVIM-1 amongst Klebsiella pneumoniae from abattoir samples of Ebonyi state, southeastern Nigeria. Gene Rep 16:100428
Article
Google Scholar
Goudarzi M, Goudarzi H, Alebouyeh M, Rad MA, Mehr FS, Zali MR, Aslani MM (2013) Antimicrobial susceptibility of Clostridium difficile clinical isolates in Iran. Iran Red Crescent Med J 15:704
Article
PubMed
PubMed Central
Google Scholar
Kato H, Yokoyama T, Kato H, Arakawa Y (2005) Rapid and simple method for detecting the toxin B gene of Clostridium difficile in stool specimens by loop-mediated isothermal amplification. J Clin Microbiol 43:6108–6112
Article
CAS
PubMed
PubMed Central
Google Scholar
Keikha M (2018) LAMP method as one of the best candidates for replacing with PCR method. Malays J Med Sci 25:121–123
PubMed
PubMed Central
Google Scholar
Lai H, Huang C, Cai J, Ye J, She J, Zheng Y, Wang L, Wei Y, Fang W, Wang X, Tang YW (2018) Simultaneous detection and characterization of toxigenic Clostridium difficile directly from clinical stool specimens. Front Med 12:196–205
Article
PubMed
Google Scholar
Lee HS, Plechot K, Gohil S, Le J (2021) Clostridium difficile: Diagnosis and the consequence of over diagnosis. Infect Dis Ther 26:1–11
Google Scholar
Leffler DA, Lamont JT (2015) Clostridium difficile infection. N Engl J Med 37:1539–1548
Article
Google Scholar
Legaria MC, Rollet R, Di Martino A, Castello L, Barberis C, Rossetti MA, Guardati MC, Canigia LF, Carloni G, Litterio M, Rocchi M (2018) Detection of toxigenic Clostridioides [Clostridium] difficile: Usefulness of two commercially available enzyme immunoassays and a PCR assay on stool samples and stool isolates. Rev Argent Microbiol 50:36–44
PubMed
Google Scholar
Marcos P, Whyte P, Rogers T, McElroy M, Fanning S, Frias J, Bolton D (2021) The prevalence of Clostridioides difficile on farms, in abattoirs and in retail foods in Ireland. Food Microbiol 98:103781
Article
CAS
PubMed
Google Scholar
Marra AR, Perencevich EN, Nelson RE, Samore M, Khader K, Chiang HY, Chorazy ML, Herwaldt LA, Diekema DJ, Kuxhausen MF, Blevins A, Ward MA, McDanel JS, Nair R, Balkenende E, Schweizer ML (2020) Incidence and outcomes associated with Clostridium difficile infections: a systematic review and meta-analysis. JAMA Netw Open 3:e1917597
Article
PubMed
PubMed Central
Google Scholar
McElgunn CJ, Pereira CR, Parham NJ, Smythe JE, Wigglesworth MJ, Smielewska A, Parmar SA, Gandelman OA, Brown NM, Tisi LC, Curran MD (2014) A low complexity rapid molecular method for detection of Clostridium difficile in stool. PLoS ONE 9:e83808
Article
PubMed
PubMed Central
Google Scholar
Moosavian M, Seyed-Mohammadi S, Saki M, Shahi F, Sima MK, Afshar D, Barati S (2019) Loop-mediated isothermal amplification for detection of Legionella pneumophila in respiratory specimens of hospitalized patients in Ahvaz, southwest Iran. Infect Drug Resist 12:529–534
Article
CAS
PubMed
PubMed Central
Google Scholar
Obande GA, Banga Singh KK (2020) Current and future perspectives on isothermal nucleic acid amplification technologies for diagnosing infections. Infect Drug Resist 13:455–483
Article
CAS
PubMed
PubMed Central
Google Scholar
Persson S, Torpdahl M, Olsen KE (2008) New multiplex PCR method for the detection of Clostridium difficile toxin A (tcdA) and toxin B (tcdB) and the binary toxin (cdtA/cdtB) genes applied to a Danish strain collection. Clin Microbiol Infect 14:1057–1064
Article
CAS
PubMed
Google Scholar
Phetsuksiri B, Rudeeaneksin J, Srisungngam S, Bunchoo S, Klayut W, Nakajima C, Hamada S, Suzuki Y (2020) Comparison of loop-mediated isothermal amplification, microscopy, culture, and PCR for diagnosis of pulmonary tuberculosis. Jpn J Infect Dis 73:272–277
Article
CAS
PubMed
Google Scholar
Plants-Paris K, Bishoff D, Oyaro MO, Mwinyi B, Chappell C, Kituyi A, Nyangao J, Mbatha D, Darkoh C (2019) Prevalence of Clostridium difficile infections among Kenyan children with diarrhea. Int J Infect Dis 81:66–72
Article
PubMed
Google Scholar
Putsathit P, Maneerattanaporn M, Piewngam P, Kiratisin P, Riley TV (2017) Prevalence and molecular epidemiology of Clostridium difficile infection in Thailand. New Microbes New Infect 15:27–32
Article
CAS
PubMed
Google Scholar
Samir A, Abdel-Moein KA, Zaher HM (2021) Molecular detection of toxigenic Clostridioides difficile among diarrheic dogs and cats: A mounting public health concern. Vet Sci 8:88
Article
PubMed
PubMed Central
Google Scholar
Sheikh AF, Bandbal MM, Saki M (2020) Emergence of multidrug-resistant Shigella species harboring extended-spectrum beta-lactamase genes in pediatric patients with diarrhea from Southwest of Iran. Mol Biol Rep 47:7097–7106
Article
Google Scholar
Shoaei P, Shojaei H, Khorvash F, Hosseini SM, Ataei B, Tavakoli H, Jalali M, Weese JS (2019) Molecular epidemiology of Clostridium difficile infection in Iranian hospitals. Antimicrob Resist Infect Control 8:12
Article
PubMed
PubMed Central
Google Scholar
Silva RO, Salvarani FM, Cruz Júnior EC, Pires PS, Santos RL, Assis RA, Guedes RM, Lobato FC (2011) Detection of enterotoxin A and cytotoxin B, and isolation of Clostridium difficile in piglets in Minas Gerais, Brazil. Cienc Rural 41:1430–1435
Article
CAS
Google Scholar
Usacheva EA, Jin JP, Peterson LR (2016) Host response to Clostridium difficile infection: diagnostics and detection. J Glob Antimicrob Resis 1:93–101
Article
Google Scholar
Wang P, Huang Y, Peng X, Huang Y, Chen D, Li S, Huang H (2019) Toxicity-based typing of Clostridioides difficile by loop-mediated isothermal amplification (LAMP) in critically ill patients. Nanosci Nanotechnol Lett 11:569–575
Article
Google Scholar
Wei C, Wen-En L, Yang-Ming L, Shan L, Yi-Ming Z (2015) Diagnostic accuracy of loop-mediated isothermal amplification in detection of Clostridium difficile in stool samples: a meta-analysis. Arch Med Sci 11:927
CAS
PubMed
PubMed Central
Google Scholar
Xiao Y, Liu Y, Qin X (2020) Comparative study of Clostridium difficile clinical detection methods in patients with diarrhoea. Can J Infect Dis Med Microbiol 2020:8753284
Article
PubMed
PubMed Central
Google Scholar
Ye J, Coulouris G, Zaretskaya I, Cutcutache I, Rozen S, Madden T (2012) Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction. BMC Bioinform 13:134
Article
CAS
Google Scholar
Yu L, Li H, Zhao X, Wang X, Wei X, Lin W (2017) Rapid visual detection of binary toxin producing Clostridium difficile by loop-mediated isothermal amplification. Exp Ther Med 14:4781–4788
CAS
PubMed
PubMed Central
Google Scholar
Zainul NH, Ma ZF, Besari A, Asma HS, Rahman RA, Collins DA (2017) Prevalence of Clostridium difficile infection and colonization in a tertiary hospital and elderly community of North-Eastern Peninsular Malaysia. Epidemiol Infect 145:3012–3019
Article
CAS
PubMed
Google Scholar
Zarandi ER, Mansouri S, Nakhaee N, Sarafzadeh F, Iranmanesh Z, Moradi M (2017) Frequency of antibiotic associated diarrhea caused by Clostridium difficile among hospitalized patients in intensive care unit, Kerman Iran. Gastroenterol Hepatol Bed Bench 10:229
Google Scholar
Zhou Y, Mao L, Yu J, Lin Q, Luo Y, Zhu X, Sun Z (2019) Epidemiology of Clostridium difficile infection in hospitalized adults and the first isolation of C. difficile PCR ribotype 027 in central China. BMC Infect Dis 19:1–4
Article
Google Scholar