Identification of diacetonamine from soybean curd residue as a sporulation-inducing factor toward Bacillus spp.
AMB Express volume 7, Article number: 101 (2017)
Under bioassay-guided investigation, a sporulation-inducing factor (SIF) toward Bacillus spp. was searched for in methanol (MeOH) extracts of soybean curd residues, and diacetonamine (1) was identified as the active compound. SIF was first isolated as a monoacetylated derivative (2, 4.1 mg from 655 g soybean curd residues), and its chemical structure was elucidated by field desorption mass spectrometry, electron ionization mass spectrometry, and nuclear magnetic resonance (NMR) analyses. After 48-h incubation, 40 µM diacetonamine hydrochloride (1b) exhibited sporulation-inducing activity with 35% sporulation frequency toward a Bacillus amyloliquefaciens wild-type strain (AHU 2170), whereas 40 µM diacetone acrylamide (3) showed 99% sporulation induction, which was much higher than that of 1b. Although Bacillus megaterium NBRC 15308 was sporulated by the treatment with 400 µM 1b with 36 and 70% sporulation frequency after 72- and 96-h incubation respectively, 3 at the same concentration showed only 2% sporulation after 72-h incubation. Hence, diacetonamine (1) was characterized as a genuine SIF from soybean curd residues, but it was uncertain whether 1 is a natural product or an artifact. Spores of B. amyloliquefaciens induced by 1b survived after treatment with heating at 95 °C for 10 min, also suggesting that 1 is genuine SIF in soybean curd residue. As sporulation induction is likely linked to activation of antibiotic production in some spore-forming Firmicutes bacteria, compound 1 would be a possible chemical tool to develop an effective fermentation technology in Bacillus species.
Few genera of the phylum Firmicutes, such as Bacillus, Paenibacillus, and Clostridium, form endospores under nutrient-starvation conditions, an event known as sporulation (Higgins and Dworkin 2012). Bacterial spores are highly tolerant to heat or drought, and even survive after autoclaving (e.g. 120 °C for 15 min). Many functional genes for sporulation in Bacillus spp. have been investigated (Eijlander et al. 2014). These spore-forming Gram-positive bacteria show not only morphological but also metabolic differentiation. In metabolic differentiation, active production of BT-toxin in B. thuringiensis (de Maagd et al. 2001; Deng et al. 2014) and some lipopeptide antibiotics in B. subtilis antibiotic production (Stein 2005), for example, are highly linked to their sporulation events. Not only severe starvation stresses but also some other physical and physiological stimulants can lead to sporulation induction (de Vries et al. 2004; Rashad et al. 2013), and this mechanism appears similar to biofilm formation for Gram-negative bacteria as a starvation-tolerant state, of which morpho-differentiation and metabolic changes are regulated by auto-regulatory chemical signals known as quormones or autoinducers (Davies et al. 1998; Duanis-Assaf et al. 2015). Soybean curd residue, also known as soybean pulp or okara, is an excellent culture medium ingredient for antibiotic production in several antibiotic-producing microorganisms (Hayashi et al. 1989; O’Toole 1999; Mizumoto et al. 2006). Particularly, Bacillus subtilis produces a large amount of iturins, cyclic lipopeptide antibiotics, in soybean curd residue medium (Ohno et al. 1995, 1996). Conversely, numerous reports also suggested a tight link between active sporulation induction and antibiotic production among Bacillus species cultured in soybean curd residues (Stein 2005).
Indeed, methanolic extract from soybean curd residue induced sporulation during pellicle formation (Fig. 1). Hence, we screened for sporulation inducing factor (SIF) in soybean curd residues using a wild-type Bacillus amyloliquefaciens AHU 2170 originally isolated from the rhizoplane of a home garden-grown Chinese cabbage and stocked in our laboratory (Sugita 2008). Its major antifungal substances were iturin A and fengycin B (Malfanova et al. 2012; Yamamoto et al. 2015), but this strain was less active in producing these lipopeptide antibiotics. When the extracts of soybean curd residue were added to 24-h pre-cultured nutrient-broth medium (corresponding to 1 g wet soybean curd residue per mL medium), antibiotic production in the liquid medium was clearly improved in the culture (Additional file 1: Figure S1). More importantly, sporulation of B. amyloliquefaciens was also accelerated, after 48-h exposure to the crude extract (Fig. 1). Given the tight linkage between antibiotic production and sporulation induction based on molecular biology analyses (Eijlander et al. 2014; Deng et al. 2014), we first searched for SIF in the extracts of soybean curd residue using B. amyloliquefaciens AHU 2170 and B. megaterium NBRC 15308 as the test bacilli.
Materials and methods
Electron ionization mass spectrometry (EI-MS), field desorption mass spectrometry (FD-MS), and field desorption high-resolution mass spectrometry (FD-HR-MS) were conducted using MS spectrometers JMS-T100GCV and JMS-SX-102 (JEOL, Tokyo, Japan). 1H-/13C-NMR spectra were recorded using a JEOL JNM-EX270 (JEOL, Tokyo, Japan) at 270/67.5 MHz and a Bruker AMX-500 (Bruker, Billerica, MA, USA) at 500/125 MHz.
Diacetonamine hydrogen oxalate (1a) was purchased from Sigma-Aldrich (St. Louis, MO, USA), and diacetonamine hydrochloride (1b) and N-acetyldiacetonamine (2) were prepared from 1a. As another chemical derivatizable from 1, diacetone acrylamide (3) was purchased from Wako (Osaka, Japan), while a β-amino acid, 3-amino-3-metylbutyric acid (4), used as a negative control was purchased from Combi-Blocks (San Diego, CA, USA). Their chemical structures are shown in Fig. 2.
Bacterial strains and culture conditions
For the sporulation assay, we used B. amyloliquefaciens AHU 2170 isolated from the rhizosphere of Chinese cabbage (Brassica rapa var. pekinensis) and stocked in our laboratory (Sugita 2008) and B. megaterium NBRC 15308 purchased from NITE Biological Resource Center, Kisarazu, Japan. Both strains of bacilli were pre-cultured at 30 °C for 24 h on a nutrient-broth (NB) agar plate before use. The B. amyloliquefaciens wild-type strain easily formed spore-based pellicle in NB liquid medium, whereas B. megaterium was a rarely sporulating Bacillus species (Strnadová et al. 1991; Larsen et al. 2014).
Bioassay for sporulation
After shaking culture of B. amyloliquefaciens or B. megaterium in NB medium (40 mL) at 30 °C for 48 h in the dark as reciprocation of 100 rpm, the samples were divided into four portions (10 mL each in 15-mL Falcon tube) and centrifuged at 3500g at 4 °C for 15 min. The resulting bacterial cell pellet was re-suspended in 10 mL MSG (minimal salts mixture +0.5% glutamic acid) medium (Freese et al. 1979) containing a test substance equivalent to that originally contained in 10 g soybean curd residue, or maximum concentration at 400 µM. When 400 µM of a chemical solution should be prepared, a 400 mM solution of the compound dissolved in dimethyl sulfoxide (DMSO) was first passed through a sterile Millex®-GV membrane filter (0.22 µm polyvinylidene fluoride, Merck Millipore Ltd., Billerica, MA), and a 10 µL portion of the solution was added to 10 mL MSG medium previously autoclaved. The 10-mL cell suspension was linear-shaken in a 30-mL Erlenmeyer flask at 80 rpm at 30 °C for 48 h for B. amyloliquefaciens. B. megaterium required 72–120 h for sporulation.
A LIVE/DEAD BacLight Bacterial Viability Kit (L13152) (Laflamme et al. 2004) was used to evaluate bacterial sporulation induction. The bacterial cells exposed to a test substance or fraction for the incubation time were collected by brief centrifugation, and the resulting cell pellet was washed with 1 mL saline twice by pipetting and then suspended in 1 mL or 100 µL Milli-Q water. The cell suspension was then mixed with 10 µL of LIVE/DEAD BacLight Bacterial Viability Kit solution (SYTO 9: propidium iodide, 9:1) and incubated for 15 min at room temperature in the dark, and then centrifuged at 10,000g for 1 min to remove the supernatant. The resulting cell pellet was re-suspended in 100 or 20 µL Milli-Q water, and a 3-µL portion of the resulting cell suspension was dropped on a glass slide (S1111, Matsunami Glass, Kishiwada, Japan) and pressed tightly with a cover glass (Matsunami Glass). The prepared slide was observed using a fluorescent microscope BioRevo (Keyens, Osaka, Japan) under 1500× magnification with an oil immersion lens.
Spores of B. amyloliquefaciens are barrel-like short-rods (physical size of approximately 0.8 µm × 1.2 µm) distinguishable from vegetative cells (typical rods, approximately 0.7 × 2.5 µm). Using a GFP-BP filter (Ex 470/40, Em 535/50, dichroic mirror 495), live cells and spores were stained as green with SYTO 9, whereas propidium iodide with a TRITC filter (Ex 540/25, Em 605/70, dichroic mirror 565) stained dead cells red. Competent cells (Yang et al. 2015) were observed as orange-colored rods. The spore cells stained with SYTO 9 were observed as green along the border with the unstained central part. Sporulation frequency (numbers of spore/numbers of spore plus vegetative cells) was calculated.
Vegetative cells of B. megaterium are relatively large (1.0 × 15 µm or more), while sporulated cells were more spherical endospores (approximately 0.8 µm × 1.0 µm) than those of B. amlyloliquefaciens and easily distinguishable from vegetative cells. Immature spores of B. megaterium were stained by SYTO 9, while mature spores were not.
Heat-tolerance assay for evaluating sporulation frequency
A 100-µL portion of spore suspension diluted 101–105-fold with Milli-Q water in a polymerase chain reaction (PCR) tube was heated at 95 °C for 10 min in a PCR thermocycler. After cooling to room temperature, the suspension was well mixed by pipetting and spread over a NB agar plate using a disposable bacteria spreader. After 24-h incubation at 30 °C in the dark, colonies were counted. As a blank, all bacterial cell suspensions were spread on NB agar plates without heating treatment.
Extraction of sporulation-inducing factor (SIF) from soybean curd residue
A 10-kg fresh weight soybean curd residue (1.85 kg from Miyoshiya Tofu, Bibai, Japan, 2.45 kg, Mameta, Sapporo, Japan, 3.0 kg, Marukawa Foods, Sapporo, Japan, and 2.7 kg, At the Bran Made of Koyama, Sapporo, Japan) was collected from grocery shops and mixed for extraction with methanol (MeOH). The soybean curd residues were soaked in 10 L of MeOH, and the methanolic extract was collected by decantation and squeezing the remaining residues in a cotton cloth. The squeezed residues were re-extracted with another 6 L of MeOH. The methanolic extracts further collected and combined were filtered in vacuo and concentrated under a low pressure to 500 mL of an aqueous solution. This aqueous solution was partitioned with hexane (500 mL × 3, 0.7 g), ethyl acetate (EtOAc) (500 mL × 3, 2.0 g), and normal butanol (n-BuOH) (500 mL × 3, 9.6 g). The resulting aqueous layer was the only fraction active as SIF.
Column chromatography in Sephadex G-25 and Sephadex LH-20
A half volume of the aqueous layer concentrated to 50 mL (over 25 g) was subjected to gel filtration using a 1.5 L Sephadex G-25 (200 g, GE Healthcare Little Chalfont, UK) column (400 mL per fraction, more than 8 fractions). Sporulation-inducing activities were observed in the first three fractions, from Fr-G-1 to Fr-G-3. The remaining half portions of the extracts were also subjected to gel filtration at the same scale as the Sephadex G-25 column, and all the active fractions obtained were combined (Fr-G-1–3, 21.76 g).
Fraction Fr-G-1–3 was further fractionated by column chromatography using a 450-mL Sephadex LH-20 (Amersham Pharmacia Biotech AB, Uppsala, Sweden) column by eluting with 5% MeOH (300 mL per fraction, total of 12 fractions), and Fr-LH-2 and LH-3 (Fr-LH-2–3, 16.55 g) showed active sporulation induction toward B. amyloliquefaciens.
Cation- and anion-exchange chromatography
For cation-exchange chromatography, Fr-LH-2–3 containing active components were applied to a 600 mL-bed volume of a CM-cellulose (cation exchange carrier, Wako) open column, previously conditioned with 0.2 M aq. HCl followed by washing with Milli-Q water. The active component was eluted with Milli-Q water in the second fraction (600 mL, Fr-CMC-2) obtained as 4.08 g of syrup.
Anion-exchange column chromatography using DEAE-cellulose (Wako, 600 mL-bed volume) was subsequently conducted for Fr-CMC-2. The DEAE-cellulose column, previously conditioned with 0.2 M aq. NaOH solution followed by washing with Milli-Q water, retained the active component in the column, despite elution with Milli-Q water (1200 mL). Therefore, the column was continuously eluted with 600 mL of 0.2 M Na2CO3 solution. As the concentrated solutes (Fr-DEAE-2, 9.71 g containing excessive Na2CO3 salts) exhibited sporulation induction, all solutes were subjected to a second gel filtration step in a 400-mL Sephadex G-25 column for elution with Milli-Q water (100 mL for each fraction). The third fraction (Fr-DS-3, 1.02 g) showed sporulation-inducing activity.
Normal phase silica gel TLC
Fraction Fr-DS-3 was analyzed by normal phase silica gel thin-layer chromatography (TLC) (Merck Kieselgel 60F254 Art. 1.05715, Merck, Kenilworth, NJ, USA) developed in n-BuOH:water (H2O):acetic acid (AcOH) 4:1:1. The main substance in the fraction gave a dark brown-colored spot at R f 0.4 by spraying with vanillin-sulfuric acid reagent. The main compound was obtained by preparative TLC (10 × 10 cm) in n-BuOH:H2O:AcOH 4:1:1 for a small portion of Fr-DS-3. However, the main compound obtained and eluted from silica gel with 50% MeOH showed no sporulation induction. The chemical substance recovered from the plate lower zones of the main band also eluted with 50% MeOH and showed clear sporulation activity.
This fraction exhibited a characteristic unique pinkish color by spraying with p-anisaldehyde-sulfuric acid reagent followed by heating, but this compound showed a severe tailing in the acidic solvent. Thus, we replaced AcOH with 25% aq. NH4OH solution, and the substance gave a fine spot on normal phase silica gel TLC in n-BuOH:25% aq. NH4OH:acetone 4:5:2.
Silica gel column chromatography with n-BuOH:25% aq. NH4OH:acetone
The active component in Fr-DS-3 (1.00 g) was further purified by silica gel column chromatography (174 g, Wakogel C60, Wako) and eluted with n-BuOH: 25% aq. NH4OH: acetone (4:5:2). Silica gel column was first conditioned with Milli-Q water followed by the eluting solution, and then Fr-DS-3 was loaded to obtain fractions (25 mL each). Each fraction was immediately concentrated in vacuo. The target substance responsive to p-anisaldehyde-sulfuric acid reagent was detected in Fr-15–Fr-22 as a single spot on TLC. All fractions (SIF-Fr-15-22) together (450 mg of a colorless solid) exhibited significant sporulation-inducing activity at a concentration equivalent to 1 g soybean curd residue per mL medium (45 µg SIF-Fr-15-22 per mL).
FD-MS (m/z, %) of SIF-Fr-15–22 showed several parent ion peaks, such as 407.0 (42), 385.0 (20), 308.1 (21), 215.0 (25), 193.0 (100), and 116.1 (81). We also tested several coloring reagents for the detection of active spots on TLC, including p-anisaldehyde-sulfuric acid reagent and ninhydrin. The target compound showed a pale pink color on spraying with p-anisaldehyde-sulfuric acid reagent followed by strong heating, but no response to ninhydrin.
Acetylation of SIF-fraction
Although the active component was highly concentrated in SIF-Fr-15–22, the active fraction contained a relatively high amount of silica gel and contaminants. To remove inactive contaminants, a portion of the dried active fraction was subjected to an acetylation reaction. A portion of SIF-Fr-15–22 (29.5 mg) re-dissolved in 2 mL of acetic anhydride and pyridine (1:1) was incubated at 70 °C for 1 h. One of the main products, 2, was detected at an R f 0.15 on silica gel TLC (hexane:EtOAc 1:1) as a purple-colored spot by spraying with p-anisaldehyde-sulfuric acid reagent. This product was purified by preparative TLC developed twice in hexane:EtOAc 1:1 to yield 4.0 mg of colorless syrup. EI-MS (m/z, %): 157 ([M]+, 11), 142 ([M–CH3]+, 9.4), 114 ([M–COCH2 + H]+, 18), 100 ([M–CH3-COCH2 + H]+, 94), 98 (42), 83 (57), 72 (24), 60 (22), 58 (100), and 43 (85). 1H-NMR (270 MHz, δH, in CDCl3): 5.8 (1H, br., NH), 2.94 (2H, s, CH2), 2.12 (3H, s, CH3), 1.90 (3H, s, Ac), and 1.39 (6H, s, 2 × CH3). 13C-NMR and distorsionless enhancement by polarization transfer (DEPT) (67 MHz, δH, in CDCl3): δC 208.18 (CO), 170.11 (COCH3), 52.15 (C), 50.93 (CH2), 31.77 (CH3), 27.52 (CH3 × 2), and 24.36 (COCH3).
Preparation of few diacetonamine derivatives from diacetonamine hydrogen oxalate
Commercially available diacetonamine hydrogen oxalate (1a, Sigma-Aldrich) was subjected to an anion exchange reaction. Compound 1a (1.23 g, 6 mmol) dissolved in 10 mL Milli-Q water was passed through a conditioned DEAE cellulose column (200 mL bed volume). An alkaline fraction eluted first was collected and neutralized using 1 M aq. HCl solution and then concentrated to yield 0.82 g of diacetonamine hydrochloride (1b) as a colorless syrup (90% yield).
For the acetylation reaction, 1a (196.4 mg) dissolved in a 1:1 mixture of Ac2O and pyridine (4 mL) was incubated at 70 °C for 1 h. A major product, N-acetyldiacetonamine (2), was obtained by preparative TLC (134.2 mg, 89% yield) as a pinkish purple-colored spot upon spraying with p-anisaldehyde-sulfuric acid spray reagent followed by heating.
Assay for diacetonamine and its amide derivatives
Diacetonamine hydrochloride (1b) was preliminarily tested at concentrations of 4, 40, and 400 µM for sporulation-inducing activities toward B. amyloliquefaciens and B. megaterium. All the test compounds, including 1b, N-acetyldiacetonamine (2), and diacetone acrylamide (3), were dissolved in DMSO to be 400 mM, and diluted with MSG medium into final concentrations of 4, 40, and 400 µM. The MSG medium for the sporulation assay always contained 0.1% DMSO.
Isolation of SIF and its chemical behaviors
The SIF toward B. amyloliquefaciens was chased in the extract of soybean curd residue (Scheme 1). Using the sporulation-inducing assay, sporulation-inducing activity was detected in the water-soluble layer, as those equivalent to 10 g soybean curd residue in 10 mL MGS medium. Gel filtration of the water layer (more than 50 g) in Sephadex G-25 column resulted in early elution of the active substance (Fr-G-1–3, total of 21.76 g). Subsequent chromatography for Fr-G-1–3 in Sephadex LH-20 column further fractionated active substance in early fractions (Fr-LH-2–3, 16.55 g).
We attempted cation- and anion-exchange column chromatography for Fr-LH-2–3. By elution with Milli-Q water, the active substance was completely passed through the cation exchange CM-cellulose column, but elution of the active component was clearly retarded from the void fraction (Fr-CMC-2, 4.08 g). The active fraction Fr-CMC-2 was further applied to the anion exchange DEAE-cellulose column. By elution with Milli-Q water, the active substance was captured in the column and eventually eluted with 0.2 M Na2CO3 solution. After removing Na2CO3 salt by a second gel filtration step in a Sephadex G-25 column, the active fraction (Fr-DS-3, 1.02 g) gave one major spot on normal phase silica gel TLC (n-BuOH:H2O:AcOH 4:1:1). However, this acidic and oligomeric sugar-like spot was inactive.
In contrast, a weak purple lower spot on TLC, appearing on spraying with p-anisaldehyde-sulfuric acid, was active in the sporulation assay. We further focused on this substance obtained as a fine condensed purple spot on TLC in n-BuOH:25% aq. NH4OH:acetone 4:5:2. All Fr-DS-3 was subjected to silica gel column chromatography by eluting with the same solvent as used for TLC. The fractions (Fr-15–22) containing the target substance were combined (SIF-Fr-15–22, 450 mg of colorless solid). This fraction yielding the target compound as a single spot on TLC (n-BuOH:25% aq. NH4OH:acetone 4:5:2) showed clear sporulation induction activity. Approximate calculation by the bioassay suggested that at least 1/10 of the active substance was recovered from the extracts of 10 kg soybean curd residue.
Identification of diacetonamine as active SIF from soybean curd residue
FD-MS analysis of SIF-Fr-15–22 showed several parent ion peaks, indicating that this active fraction was a mixture. A portion of the active component (29.5 mg) was subjected to acetylation. After this reaction, SFI-Fr-15–22 yielded two major products, and the one detected at R f 0.15 in hexane:EtOAc 1:1 showed a pinkish color by spraying with p-anisaldehyde-sulfuric acid reagent. This target product (4.1 mg of colorless syrup, 30% yield) showed its parent ion at m/z 157 (115 + COCH2), indicating a monoacetylated product derived from compound with a molar mass of 116.1 (chemical formula of C6H13NO + H+, by FD-HR-MS).
1H-, 13C-NMR, and DEPT spectra of the monoacetylated derivative (1c) in chloroform-d showed two singlet methyl proton signals at δH 1.39 magnetically equivalent (CH3 × 2, s), singlet methyl proton signal at δH 1.90 assignable as the acetyl group (–NH–CO–CH 3 ), another singlet methyl proton signal at δH 2.12 assignable as connected with the carbonyl carbon on the skeleton (–CO–CH 3 ), and set of methylene proton signals equivalent at δH 2.94 (s, 2H).
13C-NMR and DEPT showed two equivalent methyl carbons at δC 27.52 (×2), methyl carbon next to the carbonyl group (δC 31.76), and methylene carbon at δC 50.93. A quaternary carbon at δC 52.15 was assigned as connected with an amino group and two methyl groups. Carbon signals at δC 170.11 (carboxy carbon) and δC 24.36 (methyl carbon) were assignable to an acetyl group. Thus, one remaining carbon for the chemical formula (C6H13NO + COCH2) was assigned as a carbonyl carbon (δC 208.18) positioned between the methyl carbon (δC 31.77) and methylene carbon (δC 50.93).
The monoacetylated compound, derivatized from the active principle, was thus elucidated as N-acetyl-4-amino-4-methyl-2-pentanone (= N-acetyldiacetonamine, 2). Therefore, the compound was identified as diacetonamine (4-amino-4-methyl-2-pentanone, 1) with a molar mass of 115.1 g/mol. From commercially available diacetonamine hydrogen oxalate (1a), N-acetyldiacetonamine (2) was also prepared (yield 89% from 1a) and completely matched with 2 prepared from SFI-Fr-15–22 in the 1H- and 13C-NMR spectra.
Activity of diacetonamine (1) and diacetonamine amide derivatives
Using relatively stable diacetonamine hydrochloride (1b), the sporulation-inducing activity of 1 was examined. As our isolation process for compound 1 allowed approximate estimation that 1 kg soybean curd residue contains at most 45 mg (approximately 400 µmol) of 1. Hence, 400 µM was initially set at the concentration of pure 1b tested for sporulation induction toward the vegetative cells of B. amyloliquefaciens. Within 48 h of incubation, compound 1b at 400 µM showed sporulation inducing activity (51% frequency) nearly equivalent to that of the final active fraction from soybean curd residue, but its 1/10 concentration (40 µM) was less active (35% sporulation frequency) (Fig. 3; Table 1).
As compound 1 with the free amine is relatively unstable, two amide derivatives N-acetyldiacetonamine (2) and diacetone acrylamide (3) more stable than 1 were also tested for sporulation induction assay. Toward B. amyloliquefaciens incubated for 48 h, 400 µM of 2 and 3 showed 54 and 69% sporulation frequencies respectively, which were almost equivalent to or obviously higher than that of 1b. Interestingly, 40 µM of 3 showed 99% sporulation without cell death (Fig. 3). Therefore, the spores obtained by the treatment with 40 µM of 3 were subjected to heat-tolerant assay, and almost all of the spores survived at 95 °C (Fig. 4). Thus, appearance of the B. amyloliquefaciens colonies showed that the spores thus induced by 3 and 1c are genuine endospores resistant to highly adverse conditions.
In the vegetative cells of B. megaterium treated with 400 µM of 1b, sporulation induction (36%) was observed at 72-h incubation, in which spores were uniquely stained with SYTO 9 as green fluorescence (arrowheads in 72 h, Fig. 5a). After the incubation for 96–120 h, the spores of B. megaterium have changed to mature one unstainable with SYTO 9 (arrowheads in 120 h, Fig. 5a). Thus, relatively slow response of B. megaterium to 1b needed 72-h or longer incubation for the sporulation induction. In addition, dose-dependent manner of 1b revealed that 40 µM of 1b induced relatively early stages of sporulation toward vegetative cells of B. megaterium after 96-h incubation (55%), while 400 µM of 1b induced 70% sporulation to B. megaterium under the same incubation conditions. Conversely, 1b at 4 µM did not induce any sporulation at 96 h or even after the incubation for 120 h (Fig. 5b).
Diacetone acrylamide (3) was also examined its sporulation inducing activity toward B. megaterium. Compound 3 at 400 µM did not induce any sporulation at 72-h incubation (Fig. 6a). By the incubation for additional 24 h, 3 led to 66% sporulation frequency that was almost equivalent to 1b at the same concentration (400 µM) (Fig. 6b). Thus, 3 showed slower sporulation induction than 1b, leading to almost a 24-h delayed response of B. megaterium in the morpho-differentiation. The negative control 4 at the same concentration did not induce any sporulation even at 120 h incubation.
Our study revealed that diacetonamine (1) was the main active component in soybean curd residue. Isolation and identification of 1 as SIF were successfully achieved due to our simple and quick bioassay system using the B. amyloliquefaciens wild-type strain. In this study, diacetonamine hydrochloride (1 b) showed greater than 34 and 51% sporulation frequencies toward vegetative cells of B. amyloliquefaciens at 40 and 400 µM respectively, while 40 µM of diacetone acrylamide (3) induced nearly 100% sporulation frequency in the same sporulation assay. Conversely, vegetative cells of B. megaterium upon exposure to 400 µM of 1b needed more than 72-h incubation for sporulation induction. As B. megaterium is a Bacillus species difficult to induce sporulation (Larsen et al. 2014), the sporulation-inducing activities of 1b and 3 toward this bacterium are a reliable evidence for 1 as the SIF from soybean curd residue. In addition, the sporulation-inducing activities of 1 and its related compounds toward B. megaterium suggested that not only B. amyloliquefaciens but several Bacillus species are responsive to 1 for sporulation induction.
So far as our literature investigation, an aqueous extract of Pueraria radix contained diacetonamine-reineckate (Nakamoto et al. 1975). However, the authors have also shown that 1 in the extract was an artifact yielded by Michael addition of ammonia to mesityl oxide that had been formed by dimerization of acetone used for the extraction solvent (Nakamoto et al. 1976). In contrast, it is most likely that the substance 1 isolated from soybean curd residue is not the artifact spontaneously produced during the isolation process of SIF, simply because we used neither acetone nor ammonia for the extraction and following purification process to obtain Fr-DS-3 (Scheme 1). Indeed, Fr-DS-3 allowed detection of 1 as a unique purple spot on TLC by spraying with p-anisaldehyde-sulfuric acid reagent followed by heating. Conversely, there is no evidence whether the compound 1 is a spontaneous artifact during food processing for production of soybean curd residue or a secondary metabolite contained in soybean endosperm. Hence, we never eliminate possibility that 1 is produced as an artifact during boiling and pasting processes of imbibed soybean.
As a report on biological activity of 1 or its derivatives, 1 oxalate-copper has been characterized as an antifungal substance (Ji et al. 2009). Conversely, diacetone acrylamide (3) that has been produced on an industrial scale polymerizes with a wide variety of vinyl compounds for a crosslinking agent was characterized as a stable sporulation inducer. Since 3 is water-soluble and more stable than 1, amide derivatives including 3 would be a promising target for a photoaffinity probe design to detect sporulation signal-sensing proteins linked to the sporulation (Asayama and Kobayashi 1993; Lecca et al. 2016). Because it is known that sporulation event is often linked to the high productivity of antibiotics (Stein 2005), our discovery of diacetonamine (1) as a SIF-like compound may contribute to rapid preparation of probiotic materials and exploiting an effective fermentation technology for antibiotic production by Bacillus species (Lecca et al. 2016). Further studies on these low molecular compounds towards some other spore-forming Firmicutes bacteria will be reported elsewhere.
electron ionization mass spectrometry
field desorption high-resolution mass spectrometry
field desorption mass spectrometry
glutamine-containing minimal salt
nuclear magnetic resonance
Asayama M, Kobayashi Y (1993) Signal transduction and sporulation in Bacillus subtilis: heterologous phosphorylation of Spo0A, a sporulation initiation gene product. J Biochem 114(3):385–388
Davies DG, Parsek MR, Pearson JP, Iglewski BH, Costerton JW, Greenberg EP (1998) The involvement of cell-to-cell signals in the development of a bacterial biofilm. Science 280(5361):295–298. doi:10.1126/science.280.5361.295
de Maagd RA, Bravo A, Crickmore N (2001) How Bacillus thuringiensis has evolved specific toxins to colonize the insect world. Trends Genet 17(4):193–198. doi:10.1016/S0168-9525(01)02237-5
de Vries YP, Hornstra LM, de Vos WM, Abee T (2004) Growth and sporulation of Bacillus cereus ATCC 14579 under defined conditions: temporal expression of genes for key sigma factors. Appl Environ Microbiol 70(4):2514–2519. doi:10.1128/AEM.70.4.2514-2519.2004
Deng C, Peng Q, Song F, Lereclus D (2014) Regulation of cry gene expression in Bacillus thuringiensis. Toxins 6(7):2194–2209. doi:10.3390/toxins6072194
Duanis-Assaf D, Steinberg D, Chai Y, Shemesh M (2015) The LuxS based quorum sensing governs lactose induced biofilm formation by Bacillus subtilis. Front Microbiol 6:1517. doi:10.3389/fmicb.2015.01517
Eijlander RT, de Jong A, Krawczyk AO, Holsappel S, Kuipers OP (2014) SporeWeb: an interactive journey through the complete sporulation cycle of Bacillus subtilis. Nucleic Acids Res 42:D685–D691. doi:10.1093/nar/gkt1007
Freese E, Heinze JE, Galliers EM (1979) Partial purine deprivation causes sporulation of Bacillus subtilis in the presence of excess ammonia, glucose and phosphate. J Genet Microbiol 115(1):193–205. doi:10.1099/00221287-115-1-193
Hayashi H, Takiuchi K, Murao S, Arai M (1989) Structure and insecticidal activity of new indole alkaloids, okaramines A and B, from Penicillium simplicissimum AK-40. Agric Biol Chem 53(2):461–470. https://www.jstage.jst.go.jp/article/bbb1961/53/2/53_2_461/_pdf
Higgins D, Dworkin J (2012) Recent progress in Bacillus subtilis sporulation. FEMS Microbiol Rev 36(1):131–148. doi:10.1111/j.1574-6976.2011.00310.x
Ji Z, Wei S, Wu W (2009) Bis(4-ammonio-4-methyl-pentan-2-one-κO)dioxalato-κ4 O1, O2-copper(II). Acta Crystallogr Sect E Struct Rep Online 65(Pt 2):m182. doi:10.1107/S1600536808042396
Laflamme C, Lavigne S, Ho J, Duchaine C (2004) Assessment of bacterial endospore viability with fluorescent dyes. J Appl Microbiol 96(4):684–692. doi:10.1111/j.1365-2672.2004.02184.x
Larsen N, Thorsen L, Kpikpi EN, Stuer-Lauridsen B, Cantor MD, Nielsen B, Brockmann E, Derkx PM, Jespersen L (2014) Characterization of Bacillus spp. strains for use as probiotic additives in pig feed. Appl Microbiol Biotechnol 98(3):1105–1118. doi:10.1007/s00253-013-5343-6
Lecca P, Mura I, Re A, Barker GC, Ihekwaba AEC (2016) Time series analysis of the Bacillus subtilis sporulation network reveals low dimensional chaotic dynamics. Front Microbiol 7:1760. doi:10.3389/fmicb.2016.01760
Malfanova N, Franzil L, Lugtenberg B, Chebotar V, Ongena M (2012) Cyclic lipopeptide profile of the plant-beneficial endophytic bacterium Bacillus subtilis HC8. Arch Microbiol 194(11):893–899. doi:10.1007/s00203-012-0823-0
Mizumoto S, Hirai M, Shoda M (2006) Production of lipopeptide antibiotic iturin A using soybean curd residue cultivated with Bacillus subtilis in solid-state fermentation. Appl Microbiol Biotechnol 72(5):869–875. doi:10.1007/s00253-006-0389-3
Nakamoto H, Miyamura S, Inada K, Nakamura N (1975) The study of the aqueous extract of Puerariae radix. I. The preparation and the components of the active extract. Yakugaku Zasshi 95(2):1123–1127. https://www.jstage.jst.go.jp/article/yakushi1947/95/9/95_9_1123/_pdf
Nakamoto H, Inada K, Nakamura N (1976) The study on the aqueous extract of Puerariae radix. III. On the formation of diacetonamine from choline-reineckate in acetone. Yakugaku Zasshi 96(2):251–254
Ohno A, Ano T, Shoda M (1995) Production of a lipopeptide antibiotic, surfactin, by recombinant Bacillus subtilis in solid state fermentation. Biotechnol Bioeng 47(2):209–214. doi:10.1002/bit.260470212
Ohno A, Ano T, Shoda M (1996) Use of soybean curd residue, okara, for the solid state substrate in the production of a lipopeptide antibiotic, iturin A, by Bacillus subtilis NB22. Process Biochem 31(8):801–806. doi:10.1016/S0032-9592(96)00034-9
O’Toole DK (1999) Characteristics and use of okara, the soybean residue from soy milk production—a review. J Agric Food Chem 47(2):363–371. doi:10.1021/jf980754l
Rashad FM, Saleh WD, Fathy HM (2013) Optimization of bio-mosquitocidal production using local bacterial strains of Bacillus sphaericus. J Fertil Pestic 4(1):134. doi:10.4172/2155-6202.1000134
Stein T (2005) Bacillus subtilis antibiotics: structures, syntheses and specific functions. Mol Microbiol 56(4):845–857. doi:10.1111/j.1365-2958.2005.04587.x
Strnadová M, Hecker M, Wölfel L, Mach H, Chaloupka J (1991) Temperature shifts and sporulation of Bacillus megaterium. Microbiology 137(4):787–795. doi:10.1099/00221287-137-4-787
Sugita H (2008) Bacillus amyloliquefaciens isolated from the root of a Brassicaceae plant showing hyphal growth inhibition against Fusarium fungi. Master thesis, Hokkaido University, Sapporo, Japan
Yamamoto S, Shiraishi S, Suzuki S (2015) Are cyclic lipopeptides produced by Bacillus amyloliquefaciens S13-3 responsible for the plant defence response in strawberry against Colletotrichum gloeosporioides? Lett Appl Microbiol 60(4):379–786. doi:10.1111/lam.12382
Yang Y, Wu HJ, Lin L, Zhu QQ, Borriss R, Gao XW (2015) A plasmid-born Rap-Phr system regulates surfactin production, sporulation and genetic competence in the heterologous host, Bacillus subtilis OKB105. Appl Microbiol Biotechnol 99(17):7241–7252. doi:10.1007/s00253-015-6604-3
AI did isolation of active substance from the methanolic extract, and also evaluated diacetonamine and its related compounds for sporulation induction. DK collected preliminary data for chromatographic behavior and biological activity of the SIF in soybean curd residues, and established simple assay to evaluate sporulation induction using SYTO 9. YH initially planned and designed experiments, and identified SIF in the extract of soybean curd residue as diacetonamine. YH wrote manuscript and DK assisted it. All authors read and approved the final manuscript.
We thank Mr. Yusuke Takada (GC–MS and NMR Laboratory, Research faculty of Agriculture, Hokkaido University) for MS and NMR analyses. We would like to thank Editage (www.editage.jp) for English language editing.
The authors declare that they have no competing interests.
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Ikeda, A., Kim, D. & Hashidoko, Y. Identification of diacetonamine from soybean curd residue as a sporulation-inducing factor toward Bacillus spp.. AMB Expr 7, 101 (2017). https://doi.org/10.1186/s13568-017-0395-0