Inhibitory effects of H-Ras/Raf-1-binding affibody molecules on synovial cell function
© Shibasaki et al.; licensee Springer. 2014
Received: 26 September 2014
Accepted: 31 October 2014
Published: 11 November 2014
Affibody molecules specific for H-Ras and Raf-1 were evaluated for their ability to inhibit synovial cell function. Affibody molecules targeting H-Ras (Zras122, Zras220, and Zras521) or Raf-1 (Zraf322) were introduced into the MH7A synovial cell line using two delivery methods: transfection with plasmids encoding the affibody molecules or direct introduction of affibody protein using a cell-penetrating peptide reagent. Interleukin-6 (IL-6) and prostaglandin E2 (PGE2) production by MH7A cells were analyzed by enzyme-linked immunosorbent assay after stimulation with tumor necrosis factor-alpha (TNF-α). Cell proliferation was also analyzed. Phosphorylation of extracellular signal-regulated kinase (ERK) was analyzed by western blot. All affibody molecules could inhibit IL-6 and PGE2 production in TNF-α-stimulated MH7A cells. The inhibitory effect was stronger when affibody molecules were delivered as proteins via a cell-penetrating peptide reagent than when plasmid-DNA encoding the affibody moelcules was transfected into the cells. Plasmid-expressed Zras220 inhibited phosphorylation of ERK in TNF-α-stimulated MH7A cells. Protein-introduced Zraf322 inhibited the production of IL-6 and PGE2 and inhibited cell proliferation in MH7A cells. These findings suggest that affibody molecules specific for H-Ras and Raf-1 can affect intracellular signal transduction through the MAP kinase pathway to inhibit cell proliferation and production of inflammatory mediators by synovial cells.
Rheumatoid arthritis (RA) is an inflammatory disease characterized by the progressive destruction of joints. In RA, hyperplasia of synovial lining cells is observed along with angiogenesis and inflammatory mononuclear cell infiltration (Kitano et al. ). A wide variety of molecules produced by both synovial cells and infiltrating inflammatory mononuclear cells is thought to be involved in RA pathology. Specifically, proinflammatory cytokines such as interleukin-6 (IL-6), IL-17 (Schlegel et al. ) and tumor necrosis factor alpha (TNF-α) play a key role in RA pathogenesis, including the activation of synovial fibroblasts, osteoclasts, and inflammatory mononuclear cells, which results in irreversible damage to the soft tissues and bones (Olsen and Stein ).
One of the conventional disease-modifying antirheumatic drugs (DMARDs), methotrexate, is the standard for RA pharmacotherapy (Upchurch and Kay ). However, its treatment outcomes are not satisfactory and often cause high levels of toxicity and adverse effects for patients (Smolen and Steiner ). In recent years, various biological agents have been developed and used clinically as important options for RA treatment (Saag et al. ). These biological agents include an anti-CD20 antibody (rituximab) (Mélet et al. ), TNF antagonists (e.g., adalimumab, etanercept, golimumab, and infliximab), an IL-6 receptor antagonist (tocilizumab) (Smolen and Aletaha ), and a recombinant fusion protein consisting of the extracellular domain of human CTLA-4 (abatacept) (Gómez-Reino ). Although these biological agents provide favorable treatment outcomes for RA patients, in view of medical economics, biological therapies are more costly than traditional DMARDs. Thus, a more cost-effective treatment option is desirable because healthcare payers and providers are conscious of cost in light of the current period of budget constraints (Furneri et al. ).
Several biologically active, non-immunoglobulin-based proteins have been created as candidates of novel biological agents. For instance, a monobody is a target-binding protein that is generated from the fibronectin type III domain (Koide et al. ). Synthetic ankyrin repeat proteins have a binding scaffold and are potential diagnostic and therapeutic tools (Baumann et al. ). In this study, we investigated another class of non-immunoglobulin ligands, referred to as affibody molecules. They are engineered binding proteins based on a scaffold of the three-α-helix bundle Z-domain (Friedman and Ståhl ; Nilsson and Tolmachev ; Nygren ). The 6-kDa Z-domain is derived from the B-domain, one of the five domains in Staphylococcus aureus protein A (Gunneriusson et al. ).
Affibody molecules associated with signal transduction or transcription in tumor development or immune responses have been screened and applied. For example, affibody molecules against c-Jun, an oncogenic transcription factor, have been selected and are able to detect c-Jun in a melanoma cell line (Lundberg et al. ). Furthermore, other affibody molecules against human epidermal growth factor receptor (HER), specifically HER2 (Lindberg et al. ) and HER3 (Malm et al. ), have been investigated.
We have previously reported the selection of H-Ras-binding or Raf-1-binding affibody molecules (Grimm et al. ). Affibody clones Zras122, Zras220, and Zraf322 were isolated by phage display selection from a library, and the specificity and affinity for H-Ras or Raf-1 proteins were determined in that study. Each molecule was demonstrated to selectively bind Ras or Raf-1 proteins, but not other human control proteins. Zras122, Zras220, and Zraf322 had binding affinities in the high nanomolar to low micromolar range, as demonstrated by a real-time biospecific interaction analysis. As an alternative or complement to current RA treatment regimens, these affibody molecules might have the potential to inhibit signal transduction mediated by Ras and Raf, since this signaling is thought to be important for efficient synthesis of several inflammatory mediators (Yamamoto et al. ).
In this study, we investigated the effect of introducing H-Ras-binding and Raf-1-binding affibody molecules in the MH7A synovial cell line (Tsunemi et al. ). First, we subcloned DNA encoding affibody molecules against H-Ras or Raf-1 into a plasmid DNA vector for mammalian expression, and the vectors were introduced into MH7A cells. Then, affibody proteins were produced using an Escherichia coli expression system and were introduced into MH7A cells. We investigated inhibition caused by H-Ras- or Raf-1-targeting affibody molecules on the production of the inflammatory mediators IL-6 and prostaglandin E2 (PGE2). Furthermore, we examined proliferation of MH7A cells.
Materials and methods
The human MH7A synovial cell line (Riken, Saitama, Japan), which originated from intra-articular soft tissue of the knee joints of an RA patient, was established by transfection with the SV40 T antigen (Miyazawa et al. ). MH7A cells were cultured in RPMI 1640 (Sigma, St. Louis, MO, USA) containing 10% heat-inactivated fetal bovine serum (Whittaker, Walkersville, MD, USA), 100 units/mL of penicillin, and 100 μg/mL of streptomycin (Invitrogen, CA, USA) at 37°C in an atmosphere of 5% CO2 in air.
Plasmid construction for affibodies and introduction into MH7A cells
The plasmids that were used to produce affibodies in mammalian cells were constructed by first amplifying DNA encoding anti-H-Ras and anti-Raf-1 affibodies (Zras122, Zras220, Zras521, and Zraf322) by PCR using primers 5'-AAGGGGATCCACCATGGGCAGCAGCCATCATCATCA-3' and 5'-AGGGGTTATGCTAGTTATTGCTCAGCGCGGAATTCTTA-3' (Grimm et al. ). DNA sequences of affibody molecules are listed the additional file (Additional file 1). Each fragment was inserted into the multiple cloning site of pcDNA3.1(+) (Invitrogen). The nucleotide sequences of these constructs were confirmed by sequencing with an ABI PRISM 3100 Genetic Analyzer (Applied Biosystems, Foster City, CA, USA). Constructs were introduced into MH7A cells for transient expression using Lipofectamine 2000 (Invitrogen) following the manufacturer's instructions. Cells used for transfection were seeded at 1.7 × 105 cells/well in a 24-well plate (BD, Franklin Lakes, NJ, USA) and cultured for 1 d before transfection.
Western blot analysis of affibody expression
MH7A cells transfected with affibody-encoding plasmids (1 × 107) were plated in a 24-well plate. After 48 or 72 h of incubation, cells were lysed in Mammalian Lysis Buffer from the Qproteome Mammalian Protein Prep Kit (Qiagen, Hilden, Germany), and protein content was determined using the Bio-Rad Protein Assay Reagent (Bio-Rad, Hercules, CA, USA) with bovine serum albumin as the standard. Each sample was resolved by SDS-PAGE on 20% polyacrylamide gels and then transferred to 0.45-μm nitrocellulose membranes. After blocking overnight at 4°C with Blocking One Solution (Nacalai Tesque, Kyoto, Japan), membranes were incubated with goat polyclonal antibody specific for the affibody (Abcam, Cambridge, UK) as the primary antibody (1:400 dilution in phosphate-buffered saline; PBS) overnight at 4°C. After washing the membranes with Tris-buffered saline-0.05% Tween 20 (washing buffer), target proteins were detected with alkaline phosphatase (AP)-labeled ReserveAP Rabbit anti-goat immunoglobulin G (IgG) (KPL, Gaithersburg, MD, USA; 1:1,000 dilution in 1% PBS containing 0.05% Tween 20). NBT/BCIP (Roche, Mannheim, Germany) was used as the AP colorimetric substrate for visualization.
Measurement of IL-6 or PGE2 levels
MH7A cells (2 × 104) that were transfected with an affibody-encoding plasmid were plated in a 24-well plate and cultured in the presence or absence of 100 ng/mL TNF-α. After 24 or 48 h of incubation, IL-6 and PGE2 levels were determined by assaying supernatants with an Enzyme-Linked Immunosorbent Assay (ELISA) Kit for IL-6 (R&D Systems, Minneapolis, MN, USA) or PGE2 (ENZO Life Sciences, Farmingdale, NY, USA), respectively, according to the instructions.
Cell proliferation studies
Cell viability was determined using a Cell Counting Kit (CCK)-8 (Dojindo, Kumamoto, Japan), in which 2-(2-methoxy-4-nitrophenyl)-3-(4-nitrophenyl)-5-(2,4-disulfophenyl)-2H-tetrazolium monosodium salt was used as a substrate (Ohuchida et al. ). Absorbance was measured using a SpectraMax M2 Microplate Reader (Molecular Devices, Sunnyvale, CA, USA) at 450 nm (Shibasaki et al. ).
Western blot analysis for phosphorylated extracellular signal-regulated kinase (p-ERK)
Western blot analysis was performed as described above. Briefly, MH7A cells transfected with affibody-encoding plasmids (1 × 107) were plated in a 24-well plate, incubated for 24 h, and then stimulated with 100 ng/mL TNF-α (Sigma). After an additional incubation of 16 or 24 h, the soluble fraction of the cells was analyzed by western blot analysis using IgG against p-ERK (Santa Cruz Biotechnology, Dallas, TX, USA) as a primary antibody. Goat polyclonal IgG against actin (Santa Cruz) was used as a control.
Affibody protein production in E. coli
Expression of the pAffi-Zras122, -Zras220, -Zras521, and -Zraf322 plasmids in E. coli BL21(DE3) produced H-Ras and Raf-1 affibody molecules with an N-terminal 6 × His tag. The E. coli cells were inoculated in 2 mL of Luria-Bertani (LB) broth containing 100 μg/L ampicillin and were incubated in a shaking incubator overnight at 37°C. The 2-mL overnight cultures were used to inoculate fresh LB medium containing 100 μg/L ampicillin (125 mL), and cultures were grown at 37°C to an OD600 of 0.6-0.7. Gene expression was then induced by the addition of isopropyl β-D-thiogalactoside (Wako Pure Chemical, Osaka, Japan) to a final concentration of 1 mM. After 3-4 h of incubation at 37°C, the cells were harvested by centrifugation (4,000× g, 15 min, 4°C). The cell pellets were subsequently resuspended in 10 mL of B-PER Bacterial Protein Extraction Reagent (Thermo Fisher Scientific, Waltham, MA, USA) and shaken gently for 10 min at room temperature (25°C). Cell debris was pelleted by centrifugation at 27,000 × g for 20 min. Supernatants containing soluble proteins were purified by recovering the 6 × His-Zras122, -Zras220, -Zras521, and -Zraf322 fusion proteins after passage through nickel-chelated agarose columns (Thermo Fisher Scientific). The columns were equilibrated with 10 mL of B-PER Bacterial Protein Extraction Reagent before application of the supernatant. After washing the column with B-PER wash buffer, the bound proteins were released with elution buffer (50 mM Tris, 300 mM NaCl, 200 mM imidazole, 10% [v/v] glycerol), according to a previous protocol (Shibasaki et al. ). The concentration of each protein was determined by the BCA assay (REF), and the molecular size was confirmed by SDS-PAGE.
Affibody protein introduction into MH7A cells
MH7A cells were seeded at 1.7 × 105 cells/well in a 24-well plate and cultured for 1 d before the introduction of the purified proteins. Each affibody protein (5 μg) was mixed with Xfect Protein Buffer (Takara Bio, Shiga, Japan) to a total volume to 20 μL and then mixed with Xfect Protein Transfection Reagent. As a negative control, PBS was used in the place of the affibody molecule. After substitution of culture medium with serum-free medium for the cells, a diluted protein mixture was added to cultured MH7A cells and incubated at 37°C, according to a previous protocol (Kato et al. ).
Results are expressed as the mean ± SD. The significance of the difference between the experimental results and control values was determined by Student's t-test. P values less than 0.05 were considered significant.
Expression of affibody molecules in MH7A cells
Inhibition of IL-6 and PGE2 production by plasmid-expressed affibody proteins
Phosphorylation of ERK
Inhibition of IL-6 and PGE2 production by affibody molecules as proteins in MH7A cells
Effect of affibody molecules on cell proliferation
In this study, we investigated whether affibody molecules targeting H-Ras or Raf-1 can inhibit cell proliferation and the production of inflammatory mediators in vitro. To date, it has been demonstrated that intracellularly expressed affibody molecules can bind to target molecules and inhibit their functions. For example, an affibody molecule that has an affinity for epidermal growth factor receptor (EGFR) retains EGFR in the secretory compartment. This constraint led to decreased phosphorylation of EGFR and a reduced proliferation rate (Vernet et al. ). An affibody molecule targeting HER-3 inhibits proliferation of a cancer cell line (Göstring et al. ). However, we demonstrated for the first time that an affibody targeting intracellular signal transduction molecules could inhibit cell proliferation and the production of inflammatory mediators. We demonstrated that H-Ras- (Zras122, Zras220, Zras521) or Raf-1- (Zraf322) targeting affibody molecules inhibited the production of IL-6 and PGE2 in a synovial cell line. These affibody molecules were introduced into the cells via DNA-encoding plasmids or as purified proteins. In both cases, inhibition of IL-6 and PGE2 production was observed for almost all affibody molecules.
Several previous reports indicated suppression of synovial cell function by Ras inhibition. For instance, gene transfer of a dominant negative mutant of the Ras gene (Yamamoto et al. ) or gene silencing using a locked nucleic acid against Ras (de Launay et al. ) in synovial cells inhibited the production of inflammatory mediators, such as IL-6. Consistent with these reports, we observed that affibody molecules binding to H-Ras or Raf-1 could inhibit the production of IL-6. PGE2 production by RA synovial cells is regulated by Ras (Na et al. ). Therefore, we analyzed PGE2 levels and demonstrated that these affibody molecules also inhibited PGE2 production. Matrix metalloproteinase (MMP)-3 is a protease that is produced by synovial cells upon TNF-α stimulation, and its production is regulated by Ras (Abreu et al. ). We analyzed MMP-3 levels and demonstrated that these affibody molecules also inhibited MMP-3 production (data not shown). These results indicate that affibody molecules binding to H-Ras or Raf-1 can inhibit inflammatory mediators or proteases, such as IL-6, PGE2, and MMP-3, which are crucial to RA pathogenesis.
Regarding the expression of affibody molecules in MH7A cells, we observed stronger expression of Zras122 than other affibody proteins. In addition, Zras122 protein levels increased, while Zraf322 and Zras521 protein levels decreased between 24 and 48 h (Figure 1). These results might be related to the stability of the Zras122 affibody protein afforded by the plasmid construct. Supporting this notion, we observed that Zras220 and Zras521 inhibited IL-6 production by 23.9% and 26.2% relative to the control vector treatment at 24 h, while these inhibitory effects were decreased to 17.8% and 10.1% at 48 h after TNF-α stimulation, respectively. In contrast, inhibition by Zras122 was maintained up to 48 h after TNF-α stimulation (Figure 2A), suggesting increased stability of the affibody. With regard to PGE2 production, inhibition by all affibodies at 48 h increased compared with that at 24 h after TNF-α stimulation. Of interest, the timing of maximal inhibition was different for IL-6 and PGE2, but the underlying mechanism is still unknown. The difference could be attributed to the difference in the signal transduction cascade of these inflammatory molecules.
To determine whether affibody molecules inhibit signal transduction via ERK, we examined the phosphorylation of ERK1/2, a downstream molecule of Ras/Raf signaling. Zras220 inhibited ERK1/2 phosphorylation in the early stage (16 h) after stimulation by TNF-α (Figure 3), although we did not observe distinct inhibition by other affibodies. This transient inhibition of ERK1/2 phosphorylation might be caused relatively by Zras220 via interruption of the interaction between Raf-1 and MEK1/2 (Chen et al. ). However, this inhibition on ERK1/2 phosphorylation could not be kept after 16-24 h, so that differences of phosphorylation among all affibody molecules here should be investigate more precisely in further study.
We utilized two different methods to deliver affibody molecules into synovial cells: 1) transfection of plasmids encoding the affibody molecules and 2) introduction of affibody proteins using a cell-penetrating peptide reagent. Protein-introduced affibody molecules exhibited stronger inhibition of IL-6 and PGE2 production than plasmid-expressed affibody molecules (Figures 2 and 4). Moreover, the inhibition resulting from the introduced proteins was less variable than that resulting from plasmid transfection. When cell proliferation was examined using plasmid-encoded affibody molecules, distinctive differences were not observed (Figure 5A). On the contrary, introduction of Zraf322 proteins partially inhibited cell proliferation (Figure 5B), suggesting that a plasmid-based expression system did not generate a sufficient concentration of affibody in MH7A cells to inhibit signal transduction. In the experiments using plasmids, cell proliferation was not observed at 24 (Figure 5A), while in the experiments using proteins, cell proliferation was observed at the same period (Figure 5B). This might be based on higher cytotoxicity of liposome compared with peptides used as a carrier (Suhorutsenko et al. ). These results indicate that protein-introduced affibody molecules more effectively inhibited cytokine production and cell proliferation in synovial cells than plasmid-expressed affibody molecules. Although the effect on synovial cell proliferation was not strong, our results demonstrate that it is possible to inhibit synovial cell proliferation by selecting useful affibody clones and by improving transduction efficiency of affibody protein molecules.
Inhibition of IL-6 and PGE2 production caused by the protein-introduced affibodies varied. For example, at 48 h after TNF-α stimulation, inhibition of IL-6 production was greater than 40% for three affibodies (Zras122, Zras220, and Zras521), whereas that of PGE2 was approximately 30% for two affibodies (Zras220 and Zraf322). These results could be attributed to the fact that the PGE2 receptor, which couples with G proteins, is integrated into a positive feedback loop for PGE2 production (Nishimura et al. ); thus, the effect of an affibody molecule on PGE2 production might be weaker than on IL-6. The differential effectiveness of each affibody molecule on synovial cell function might also be explained by differences in the amino acid sequences of the affibodies themselves. Each clone was selected using a phage display library of Z variants, and the amino acid sequences encoded by each clone are different.
In conclusion, we demonstrated that affibody molecules could inhibit cell proliferation and the production of inflammatory mediators by blocking the Ras/Raf signal transduction cascade. Although inhibition of cell function could be enhanced, and delivery methods should be examined further, we propose that these molecules are candidates to be investigated as a molecular-targeting therapy for RA. Studies are in progress to select useful affibody clones, to improve delivery methods of affibody protein molecules, and to verify the efficiency of affibodies in an RA model.
This work was partially supported by the Ministry of Education, Culture, Sports, Science and Technology, Japan, with a Grant-in-Aid for Young Scientists (B).
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