Bartels I, Knackmuss H-J, Reineke W: Suicide Inactivation of Catechol 2,3-Dioxygenase from Pseudomonas putida mt-2 by 3-Halocatechols. Appl Environ Microbiol 1984,47(3):500–505.
CAS
PubMed Central
PubMed
Google Scholar
Bowen D, Rocheleau TA, Blackburn M, Andreev O, Golubeva E, Bhartia R, ffrench-Constant RH: Insecticidal Toxins from the Bacterium Photorhabdus luminescens. Science 1998,280(5372):2129–2132. 10.1126/science.280.5372.2129
Article
CAS
PubMed
Google Scholar
Cai M, Xun L: Organization and Regulation of Pentachlorophenol-Degrading Genes in Sphingobium chlorophenolicum ATCC 39723. J Bacteriol 2002,184(17):4672–4680. 10.1128/JB.184.17.4672-4680.2002
Article
CAS
PubMed Central
PubMed
Google Scholar
Cerdan P, Wasserfallen A, Rekik M, Timmis KN, Harayama S: substrate-specificity of catechol 2,3-dioxygenase encoded by tol plasmid pwwo of pseudomonas-putida and its relationship to cell-growth. Journal of Bacteriology 1994,176(19):6074–6081.
CAS
PubMed Central
PubMed
Google Scholar
Chauhan A, Samanta SK, Jain RK: Degradation of 4-nitrocatechol by Burkholderia cepacia: a plasmid-encoded novel pathway. Journal of Applied Microbiology 2000,88(5):764–772. 10.1046/j.1365-2672.2000.01018.x
Article
CAS
PubMed
Google Scholar
Corvini PFX, Hollender J, Ji R, Schumacher S, Prell J, Hommes G, Priefer U, Vinken R, Schaffer A: The degradation of alpha-quaternary nonylphenol isomers by Sphingomonas sp strain TTNP3 involves a type II ipso-substitution mechanism. Applied Microbiology and Biotechnology 2006,70(1):114–122. 10.1007/s00253-005-0080-0
Article
CAS
PubMed
Google Scholar
Corvini PFX, Meesters RJW, Schaffer A, Schroder HF, Vinken R, Hollender J: Degradation of a nonylphenol single isomer by Sphingomonas sp strain TTNP3 leads to a hydroxylation-induced migration product. Applied and Environmental Microbiology 2004,70(11):6897–6900. 10.1128/AEM.70.11.6897-6900.2004
Article
CAS
PubMed Central
PubMed
Google Scholar
Corvini PFX, Meesters RJW, Schäffer A, Schröder HF, Vinken R, Hollender J: Degradation of a nonylphenol single isomer by Sphingomonas sp. strain TTNP3 leads to a hydroxylation-induced migration product. Applied and Environmental Microbiology 2004,70(11):6897–6900. 10.1128/AEM.70.11.6897-6900.2004
Article
CAS
PubMed Central
PubMed
Google Scholar
Corvini PFX, Vinken R, Hommes G, Schmidt B, Dohmann M: Degradation of the radioactive and non-labelled branched 4(3 ',5 '-dimethyl 3 '-heptyl)-phenol nonylphenol isomer by Sphingomonas TTNP3. Biodegradation 2004,15(1):9–18.
Article
CAS
PubMed
Google Scholar
Dogra C, Raina V, Pal R, Suar M, Lal S, Gartemann K-H, Holliger C, van der Meer JR, Lal R: Organization of lin Genes and IS6100 among Different Strains of Hexachlorocyclohexane-Degrading Sphingomonas paucimobilis: Evidence for Horizontal Gene Transfer. J Bacteriol 2004,186(8):2225–2235. 10.1128/JB.186.8.2225-2235.2004
Article
CAS
PubMed Central
PubMed
Google Scholar
Eltis LD, Bolin JT: Evolutionary relationships among extradiol dioxygenases. Journal of Bacteriology 1996,178(20):5930–5937.
CAS
PubMed Central
PubMed
Google Scholar
Eppink MHM, Cammaart E, van Wassenaar D, Middelhoven WJ, van Berkel WJH: Purification and properties of hydroquinone hydroxylase, a FAD-dependent monooxygenase involved in the catabolism of 4-hydroxybenzoate in Candida parapsilosis CBS604. European Journal of Biochemistry 2000,267(23):6832–6840. 10.1046/j.1432-1033.2000.01783.x
Article
CAS
PubMed
Google Scholar
Ferraroni M, Seifert J, Travkin VM, Thiel M, Kaschabek S, Scozzafava A, Golovleva L, Schlomann M, Briganti F: Crystal structure of the hydroxyquinol 1,2-dioxygenase from Nocardioides simplex 3E, a key enzyme involved in polychlorinated aromatics biodegradation. Journal of Biological Chemistry 2005,280(22):21144–21154. 10.1074/jbc.M500666200
Article
CAS
PubMed
Google Scholar
Gabriel FLP, Cyris M, Giger W, Kohler HPE: ipso-substitution: A general biochemical and biodegradation mechanism to cleave alpha-quaternary alkylphenols and bisphenol A. Chemistry & Biodiversity 2007,4(9):2123–2137. 10.1002/cbdv.200790170
Article
CAS
Google Scholar
Gabriel FLP, Cyris M, Jonkers N, Giger W, Guenther K, Kohler HPE: Elucidation of the ipso-substitution mechanism for side-chain cleavage of alpha-quaternary 4-nonylphenols and 4-t-butoxyphenol in Sphingobium xenophagum Bayram. Applied and Environmental Microbiology 2007,73(10):3320–3326. 10.1128/AEM.02994-06
Article
CAS
PubMed Central
PubMed
Google Scholar
Gabriel FLP, Heidlberger A, Rentsch D, Giger W, Guenther K, Kohler HPE: A novel metabolic pathway for degradation of 4-nonylphenol environmental contaminants by Sphingomonas xenophaga Bayram-ipso-hydroxylation and intramolecular rearrangement*. Journal of Biological Chemistry 2005,280(16):15526–15533. 10.1074/jbc.M413446200
Article
CAS
PubMed
Google Scholar
Jain RK, Dreisbach JH, Spain JC: Biodegradation of p-nitrophenol via 1, 2, 4-benzenetriol by an Arthrobacter sp. Applied and Environmental Microbiology 1994,60(8):3030–3032.
CAS
PubMed Central
PubMed
Google Scholar
Kappus H: Oxidative stress in chemical toxicity. Archives of Toxicology 1987,60(1):144–149. 10.1007/BF00296968
Article
CAS
PubMed
Google Scholar
Kohler HPE, Schmid A, van der Maarel M: Metabolism of 2, 2'-dihydroxybiphenyl by Pseudomonas sp. strain HBP1: production and consumption of 2, 2', 3-trihydroxybiphenyl. Journal of Bacteriology 1993,175(6):1621–1628.
CAS
PubMed Central
PubMed
Google Scholar
Kolvenbach B, Schlaich N, Raoui Z, Prell J, Zuhlke S, Schaffer A, Guengerich FP, Corvini PFX: Degradation Pathway of Bisphenol A: Does ipso Substitution Apply to Phenols Containing a Quaternary {alpha}-Carbon Structure in the para Position? Appl Environ Microbiol 2007,73(15):4776–4784. 10.1128/AEM.00329-07
Article
CAS
PubMed Central
PubMed
Google Scholar
Laemmli UK: Cleavage Of Structural Proteins During Assembly Of Head Of Bacteriophage-T4. Nature 1970,227(5259):680.. 10.1038/227680a0
Article
PubMed
Google Scholar
Lal R, Pandey G, Sharma P, Kumari K, Malhotra S, Pandey R, Raina V, Kohler HPE, Holliger C, Jackson C, Oakeshott JG: Biochemistry of microbial degradation of hexachlorocyclohexane and prospects for bioremediation. Microbiology and Molecular Biology Reviews 2010,74(1):58–80. 10.1128/MMBR.00029-09
Article
CAS
PubMed Central
PubMed
Google Scholar
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG: Clustal W and Clustal × version 2.0. Bioinformatics 2007,23(21):2947–2948. 10.1093/bioinformatics/btm404
Article
CAS
PubMed
Google Scholar
Latus M, Seitz HJ, Eberspacher J, Lingens F: Purification and characterization of hydroxyquinol 1, 2-dioxygenase from Azotobacter sp. strain GP1. Applied and Environmental Microbiology 1995,61(7):2453–2460.
CAS
PubMed Central
PubMed
Google Scholar
Lendenmann U, Spain J: 2-aminophenol 1,6-dioxygenase: a novel aromatic ring cleavage enzyme purified from Pseudomonas pseudoalcaligenes JS45. J Bacteriol 1996,178(21):6227–6232.
CAS
PubMed Central
PubMed
Google Scholar
Machonkin T, Holland P, Smith K, Liberman J, Dinescu A, Cundari T, Rocks S: Determination of the active site of Sphingobium chlorophenolicum 2,6-dichlorohydroquinone dioxygenase (PcpA). Journal of Biological Inorganic Chemistry 2009,15(3):291–301.
Article
Google Scholar
Manickam N, Reddy MK, Saini HS, Shanker R: Isolation of hexachlorocyclohexane-degrading Sphingomonas sp. by dehalogenase assay and characterization of genes involved in Y-HCH degradation. Journal of Applied Microbiology 2008,104(4):952–960. 10.1111/j.1365-2672.2007.03610.x
Article
CAS
PubMed
Google Scholar
Miyauchi K, Adachi Y, Nagata Y, Takagi M: Cloning and sequencing of a novel meta-cleavage dioxygenase gene whose product is involved in degradation of gamma-hexachlorocyclohexane in Sphingomonas paucimobilis. Journal of Bacteriology 1999,181(21):6712–6719.
CAS
PubMed Central
PubMed
Google Scholar
Monks TJ, Hanzlik RP, Cohen GM, Ross D, Graham DG: Quinone chemistry and toxicity. Toxicology and Applied Pharmacology 1992,112(1):2–16. 10.1016/0041-008X(92)90273-U
Article
CAS
PubMed
Google Scholar
Moonen MJH, Kamerbeek NM, Westphal AH, Boeren SA, Janssen DB, Fraaije MW, van Berkel WJH: Elucidation of the 4-hydroxyacetophenone catabolic pathway in Pseudomonas fluorescens ACB. Journal of Bacteriology 2008,190(15):5190–5198. 10.1128/JB.01944-07
Article
CAS
PubMed Central
PubMed
Google Scholar
Moonen MJH, Synowsky SA, van den Berg WAM, Westphal AH, Heck AJR, van den Heuvel RHH, Fraaije MW, van Berkel WJH: Hydroquinone dioxygenase from Pseudomonas fluorescens ACB: a novel member of the family of nonheme-iron(II)-dependent dioxygenases. Journal of Bacteriology 2008,190(15):5199–5209. 10.1128/JB.01945-07
Article
CAS
PubMed Central
PubMed
Google Scholar
Ono K, Nozaki M, Hayaishi O: Purification and some properties of protocatechuate 4,5-dioxygenase. Biochimica et Biophysica Acta (BBA)-Enzymology 1970,220(2):224–238. 10.1016/0005-2744(70)90008-2
Article
CAS
Google Scholar
Perkins DN, Pappin DJC, Creasy DM, Cottrell JS: Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 1999,20(18):3551–3567. 10.1002/(SICI)1522-2683(19991201)20:18<3551::AID-ELPS3551>3.0.CO;2-2
Article
CAS
PubMed
Google Scholar
Rieble S, Joshi DK, Gold MH: Purification and characterization of a 1, 2, 4-trihydroxybenzene 1, 2-dioxygenase from the basidiomycete Phanerochaete chrysosporium. Journal of Bacteriology 1994,176(16):4838–4844.
CAS
PubMed Central
PubMed
Google Scholar
Shen W, Liu W, Zhang J, Tao J, Deng H, Cao H, Cui Z: Cloning and characterization of a gene cluster involved in the catabolism of p-nitrophenol from Pseudomonas putida DLL-E4. Bioresource Technology 2010, in press.
Google Scholar
Spain JC, Gibson DT: Pathway For Biodegradation Of Para-Nitrophenol In A Moraxella Sp. Applied and Environmental Microbiology 1991,57(3):812–819.
CAS
PubMed Central
PubMed
Google Scholar
Sugimoto K, Senda T, Aoshima H, Masai E, Fukuda M, Mitsui Y: Crystal structure of an aromatic ring opening dioxygenase LigAB, a protocatechuate 4,5-dioxygenase, under aerobic conditions. Structure 1999,7(8):953–965. 10.1016/S0969-2126(99)80122-1
Article
CAS
PubMed
Google Scholar
Takenaka S, Okugawa S, Kadowaki M, Murakami S, Aoki K: The metabolic pathway of 4-aminophenol in Burkholderia sp strain AK-5 differs from that of aniline and aniline with C-4 substituents. Applied and Environmental Microbiology 2003,69(9):5410–5413. 10.1128/AEM.69.9.5410-5413.2003
Article
CAS
PubMed Central
PubMed
Google Scholar
Travkin VM, Jadan AP, Briganti F, Scozzafava A, Golovleva LA: Characterization of an intradiol dioxygenase involved in the biodegradation of the chlorophenoxy herbicides 2,4-D and 2,4,5-T. FEBS Lett 1997,407(1):69–72. 10.1016/S0014-5793(97)00297-4
Article
CAS
PubMed
Google Scholar
Tropel D, Meyer C, Armengaud J, Jouanneau Y: Ferredoxin-mediated reactivation of the chlorocatechol 2,3-dioxygenase from Pseudomonas putida GJ31. Archives of Microbiology 2002,177(4):345–351. 10.1007/s00203-002-0399-1
Article
CAS
PubMed
Google Scholar
Vester D, Rapp E, Gade D, Genzel Y, Reichl U: Quantitative analysis of cellular proteome alterations in human influenza A virus-infected mammalian cell lines. Proteomics 2009,9(12):3316–3327. 10.1002/pmic.200800893
Article
CAS
PubMed
Google Scholar
Wei Q, Liu H, Zhang J-J, Wang S-H, Xiao Y, Zhou N-Y: Characterization of a para-nitrophenol catabolic cluster in Pseudomonas sp. strain NyZ402 and construction of an engineered strain capable of simultaneously mineralizing both para- and ortho-nitrophenols. Biodegradation 2010,21(6):915–921. 10.1007/s10532-010-9351-2
Article
CAS
PubMed
Google Scholar
Xu L, Resing K, Lawson SL, Babbitt PC, Copley SD: Evidence That pcpA Encodes 2,6-Dichlorohydroquinone Dioxygenase, the Ring Cleavage Enzyme Required for Pentachlorophenol Degradation in Sphingomonas chlorophenolica Strain ATCC 39723. Biochemistry 1999,38(24):7659–7669. 10.1021/bi990103y
Article
CAS
PubMed
Google Scholar
Yamamoto S, Otsuka S, Murakami Y, Nishiyama M, Senoo K: Genetic diversity of gamma-hexachlorocyclohexane-degrading sphingomonads isolated from a single experimental field. Letters in Applied Microbiology 2009,49(4):472–477. 10.1111/j.1472-765X.2009.02691.x
Article
CAS
PubMed
Google Scholar
Yin Y, Zhou N-Y: Characterization of MnpC, a Hydroquinone Dioxygenase Likely Involved in the meta-Nitrophenol Degradation by Cupriavidus necator JMP134. Current Microbiology 2010,61(5):471–476. 10.1007/s00284-010-9640-3
Article
CAS
PubMed
Google Scholar
Zhang J-J, Liu H, Xiao Y, Zhang X-E, Zhou N-Y: Identification and Characterization of Catabolic para-Nitrophenol 4-Monooxygenase and para-Benzoquinone Reductase from Pseudomonas sp. Strain WBC-3. J Bacteriol 2009,191(8):2703–2710. 10.1128/JB.01566-08
Article
CAS
PubMed Central
PubMed
Google Scholar