Comparative genomic and transcriptome analysis of Bacillus velezensis CL-4 fermented corn germ meal

AMB Express

Table 1 Annotated common genes encoding lignocellulose-degrading enzymes in the twenty-three B. velezensis strains

Classification	CAZy	Predicted function	EC number
Cellulose-related	GH1	6-phospho-β-galactosidase	EC 3.2.1.85
	GH1	6-phospho-β-glucosidase;	EC 3.2.1.86
	GH4	6-phospho-β-glucosidase	EC 3.2.1.86
	GH4	6-phospho-α-glucosidase	EC 3.2.1.122
	GH4	α-galactosidase	EC 3.2.1.22
	GH5	endo-1,4-β-glucanase	EC 3.2.1.4
	GH13	a-glucosidase	EC 3.2.1.20
	GH32	endo-levanase	EC 3.2.1.65
	GH13	a-amylase	EC 3.2.1.1
	GH16	β-1,3(4)-glucanase	EC 3.2.1.73
	PL1	pectin lyase	EC 4.2.2.10
	PL1	pectate lyase	EC 4.2.2.2
	PL9	pectate lyase	EC 4.2.2.2
Hemicellulose-related	GH11	endo-β-1,4-xylanase	EC 3.2.1.8
	GH26	endo-1,4-β-mannosidase	EC 3.2.1.78
	GH30	glucuronoxylanase	EC 3.2.1.–
	GH43	Arabinan endo-1,5-α-L-arabinosidase	EC 3.2.1.99
	GH43	arabinoxylan arabinofuranohydrolase	EC 3.2.1.–
	GH43	1,4-β-xylosidase	EC 3.2.1.37
	GH51	α-N-arabinofuranosidase	EC 3.2.1.55
	CE3	acetyl xylan esterase	EC 3.1.1.72
	CE3	acetyl xylan esterase	EC 3.1.1.72
Lignin-related	AA4	vanillyl-alcohol oxidase	EC 1.1.3.38
	AA6	1,4-benzoquinone reductases	EC 1.6.5.6
	AA7	FAD-binding protein	EC 1.1.3.–
	AA10	copper-dependent lytic polysaccharide monooxygenases (LPMOs)	EC 1.14.99.53