Thermophilic bacteria are potential sources of novel Rieske non-heme iron oxygenases

Chakraborty, Joydeep; Suzuki-Minakuchi, Chiho; Okada, Kazunori; Nojiri, Hideaki

doi:10.1186/s13568-016-0318-5

AMB Express

Table 2 Putative RO terminal oxygenase α-subunit homologues obtained from blastp search against thermophilic genomes

From: Thermophilic bacteria are potential sources of novel Rieske non-heme iron oxygenases

Organism	Annotation	NCBI accn. no.
Phylum: Chloroflexi
Anaerolinea thermophila UNI-1	Putative oxidoreductase	BAJ63376
Caldilinea aerophila DSM 14535	Putative oxidoreductase	BAL99910
Roseiflexus castenholzii DSM 13941	Rieske (2Fe–2S) domain protein	ABU59830
Roseiflexus sp. RS-1	(2Fe–2S)-binding protein	WP_011955741
Sphaerobacter thermophilus DSM 20745	Rieske (2Fe–2S) domain protein	ACZ37596
Thermomicrobium roseum DSM 5159	Rieske 2Fe–2S domain protein	ACM04599
Thermomicrobium roseum DSM 5159	3-Phenylpropionate (digoxigenin) dioxygenase	ACM06903
Phylum: Deinococcus–Thermus
Meiothermus cerbereus DSM 11376	Choline monooxygenase	WP_027876468
Meiothermus chliarophilus DSM 9957	Choline monooxygenase	WP_027893118
Meiothermus ruber DSM 1279	Aromatic-ring-hydroxylating dioxygenase, α-subunit	ADD29434
Meiothermus ruber DSM 1279	Choline monooxygenase	AGK03951
Meiothermus rufus DSM 22234	Hypothetical protein	WP_027881162
Meiothermus rufus DSM 22234	Choline monooxygenase	WP_027882714
Meiothermus silvanus DSM 9946	Rieske (2Fe–2S) iron–sulfur domain protein	ADH64647
Meiothermus timidus DSM 17022	Choline monooxygenase	WP_018466224
Meiothermus timidus DSM 17022	Ribosomal subunit interface protein	WP_026234685
Thermus igniterrae ATCC 700962	Ribosomal subunit interface protein	WP_018111968
Thermus oshimai JL-2	Ring-hydroxylating dioxygenase, large terminal subunit	AFV77211
Thermus scotoductus SA-01	Biphenyl dioxygenase, subunit alpha	ADW21768
Thermus sp. CCB_US3_UF1	Aromatic-ring-hydroxylating dioxygenase, α-subunit	AEV16357
Thermus thermophilus ATCC 33923	Ribosomal subunit interface protein	WP_024119937
Thermus thermophilus JL-18	Rieske (2Fe–2S) domain-containing protein	AFH40260
Phylum: Firmicutes
Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446	Rieske (2Fe–2S) iron–sulphur domain protein	ACV59062
Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1	2Fe–2S ferredoxin	AEJ44076
Alicyclobacillus acidoterrestris ATCC 49025	Hypothetical protein	EPZ45189
Alicyclobacillus acidoterrestris ATCC 49025	Hypothetical protein^a	EPZ42375
Alicyclobacillus hesperidum URH17-3-68	3-Phenylpropionate dioxygenase	WP_040289757
Alicyclobacillus pomorum DSM 14955	Hypothetical protein	WP_035467417
Bacillus thermotolerans SGZ-8	Phthalate 4,5-dioxygenase oxygenase subunit	KKB35183
Brevibacillus thermoruber PM1	3-Phenylpropionate dioxygenase	WP_035295329
Cohnella thermotolerans DSM 17683	Rieske (2Fe–2S) protein	WP_027092788
Coprothermobacter platensis DSM 11748	Hypothetical protein	WP_018963776
Geobacillus sp. JF8	Large subunit of biphenyl dioxygenase	AGT33881
Geobacillus thermoglucosidasius NBRC 107763	Putative naphthalene 1,2-dioxygenase large subunit	GAJ45328
Sulfobacillus thermosulfidooxidans ST	Hypothetical protein	WP_051350961
Thermoactinomycetaceae bacterium GD1	Rieske (2Fe–2S) protein	WP_044639983
Thermoanaerobacterium xylanolyticum LX-11	Rieske (2Fe–2S) iron–sulfur domain protein	AEF16296
Phylum: Thermotogae
Fervidobacterium pennivorans DSM 9078	Ring-hydroxylating dioxygenase, large terminal subunit	AFG35170
Thermosipho africanus TCF52B	Oxidase-related protein	ACJ75179
Thermotoga maritima MSB8	Oxidase-related protein	AAD36358
Thermotoga maritima MSB8	Rieske (2Fe–2S) domain protein	AGL50271
Thermotoga naphthophila RKU-10	Rieske (2Fe–2S) iron–sulphur domain protein	ADA67544
Thermotoga sp. Mc24	Rieske (2Fe–2S) iron–sulfur domain-containing protein	KHC91410
Thermotoga sp. RQ2	Rieske (2Fe–2S) domain protein	ACB09872
Thermotoga sp. Xyl54	Rieske (2Fe–2S) iron–sulfur domain-containing protein	KHC95729

^aProtein truncated at the N-terminal end

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