Table 2 Changes in gene expression after 9 h of oxygen-limited fermentation of xylose
From: Disruption of PHO13 improves ethanol production via the xylose isomerase pathway
Gene | Category | Fold change | Annotated function |
|---|---|---|---|
SOL3 | Pentose phosphate pathway | 3.96 | 6-Phosphogluconolactonase |
GND1 | 3.60 | 6-Phosphogluconatedehydrogenase | |
TKL1 | 2.28 | Transketolase | |
STB5 | 1.97 | Transcription factor | |
TAL1 | 1.87 | Transaldolase | |
RKI1 | 1.44 | Ribose-5-phosphate ketol-isomerase | |
ENO1 | Glycolysis and gluconeogenesis | 1.26 | Phosphopyruvate hydratase |
RDS2 | 1.22 | Transcription factor | |
GCR1 | 1.23 | Transcriptional activator | |
PYK2 | 1.43 | Pyruvate kinase | |
SIP4 | 2.05 | C6 zinc cluster transcriptional activator | |
NDE1 | Tricarboxylic acid cycle and respiratory chain | 2.06 | Mitochondrial external NADH dehydrogenase, a type II NAD(P)H |
ACO1 | 2.03 | Aconitase | |
ACO2 | 1.58 | Putative mitochondrial aconitase isozyme | |
SDH2 | 1.52 | Iron-sulfur protein subunit of succinate dehydrogenase | |
IDH1 | 1.40 | Subunit of mitochondrial NAD+-dependent isocitrate dehydrogenase | |
IDH2 | 1.40 | Subunit of mitochondrial NAD+-dependent isocitrate dehydrogenase | |
ATP7 | 1.32 | Subunit d of the stator stalk of mitochondrial F1F0 ATP synthase | |
ATP19 | 1.30 | Subunit k of the mitochondrial F1F0 ATP synthase | |
SDH4 | 1.25 | Membrane anchor subunit of succinate dehydrogenase | |
SDH3 | 1.24 | Cytochrome b subunit of succinate dehydrogenase | |
CMC2 | 1.23 | Protein of the mitochondrial intermembrane space with a role in respiratory chain complex assembly or maintenance | |
ATP15 | 1.22 | Epsilon subunit of the F1 sector of mitochondrial F1F0 ATP synthase | |
PYC1 | 1.45 | Pyruvate carboxylase isoform | |
NDE2 | 1.60 | Mitochondrial external NADH dehydrogenase, catalyzes the oxidation of cytosolic NADH | |
ALD6 | Ethanol production and utilization | 2.51 | Cytosolic aldehyde dehydrogenase |
PDC1 | 1.34 | Major of three pyruvate decarboxylase isozymes | |
ALD5 | 1.24 | Mitochondrial aldehyde dehydrogenase | |
PDC6 | 1.87 | Minor isoform of pyruvate decarboxylase | |
ADH2 | 3.20 | Glucose-repressible alcohol dehydrogenase II |