- Open Access
Breeding of a new wastewater treatment yeast by genetic engineering
© Kato and Iefuji; licensee Springer. 2011
- Received: 19 February 2011
- Accepted: 25 May 2011
- Published: 25 May 2011
We previously developed a host vector system for the wastewater treatment yeast Hansenula fabianii J640. The promoter and terminator regions of the gene encoding glucoamylase from H. fabianii J640 were used for a new expression vector, pHFGE-1. The performance of pHFGE-1 was compared with that of the widely used pG-1 transformant vector. H. fabianii J640 (HF-TAMY) cells were transformed with pHFGE-1, and Saccharomyces cerevisiae YPH-499 (SC-TAMY) cells were transformed with pG-1, both of which carried the Taka-amylase. Expression of Taka-amylase by HF-TAMY showed higher than that by SC-TAMY. By using this new system, we bred the new wastewater treatment yeast that shows α-amylase activity. This yeast appears to grow well under experimental wastewater conditions, and is effective in treating model wastewater containing soluble and insoluble starch.
- Chemical Oxygen Demand
- Foreign Gene
- Xylanase Activity
- Soluble Starch
- Terminator Region
Many food factories use wastewater treatment systems that use yeasts (Yoshizawa 1978, 1981, Sato et al. 1986, Moriya et al. 1990, Suzuki et al. 1991, Suzuki et al. 1996). However, some wastewater-containing polysaccharides, such as raw starch and hemicellulose, are difficult to treat because presently used yeasts secrete few enzymes that can digest these polysaccharides. One way to treat these wastewaters is to transform conventional wastewater treatment yeasts with the genes for polysaccharide-digesting enzymes such as raw starch-digesting α-amylase and acid xylanase.
To this end, we isolated Cryptococcus sp. S-2 (Iefuji et al. 1994), which secretes several enzymes including raw starch-digesting α-amylase (Iefuji et al. 1996a), acid xylanase (Iefuji et al. 1996b), lipase (Kamini et al. 2000) and polygalacturonase. We then obtained the genes that encode the raw starch-digesting α-amylase and acid xylanase.
H. fabianii J640 is a commonly used wastewater treatment yeast (Saito et al. 1987, Sato et al. 1987, Suzuki et al. 1996). We previously constructed an expression system based on this strain (Kato et al. 1997). A uracil auxotrophic mutant of H. fabianii J640, named H. fabianii J640 u-1, lacking orotidin-5'-phosphate decarboxylase, was obtained. We constructed a plasmid, pHFura3, that contains the gene encoding orotidine-5'-phosphate decarboxylase of H. fabianii J640. In the previous study (Kato et al. 1997), by employing H. fabianii J640 u-1 as a host strain and pHFura3 as a vector plasmid, we constructed a transformation system of H. fabianii J640.
We purified the glucoamylase of H. fabianii J640 and cloned its cDNA and genomic DNA (Kato et al. in press). Then, we constructed a new expression vector, pHFGE-1 (Kato et al. in press), which uses pHFura3, and the promoter and terminator regions of the gene encoding glucoamylase from H. fabianii J640. We inserted the genes encoding α-amylase and xylanase from Cryptococcus sp. S-2 between the promoter and terminator of pHFGE-1. When the pHFGE-1 with one or the other of these foreign genes were transformed into H. fabianii J640 u-1, the transformants (named HF-AAMY and HF-XYN, respectively) showed α-amylase and xylanase activities respectively. This showed that pHFGE-1 can derive the expression of foreign genes in H. fabianii J640 cells.
In this paper, we investigated the ability of these transformed yeasts, to treat wastewater, and developed a PCR method for monitoring the presence of the foreign gene.
Strains and media
Strains H. fabianii J640 and Cryptococcus sp. S-2 were obtained from the National Research Institute of Brewing culture collection, Japan. A uracil auxotrophic mutant of H. fabianii J640, named H. fabianii J640 u-1, lacking orotidine-5'-phosphate decarboxylase, was used as a host strain for new expression vector pHFGE-1. S. cerevisiae YPH-499 (MATα ura3 lus2 ade2 trp1 his3 leu2) was used as the host for transformation vector pG-1 (Schena et al. 1991). E. coli strain HB101 and JM109 were employed as the host of plasmid vector, which were used for DNA manipulation and construction of the gene library.
Yeast cells were grown on YM medium (0.3% yeast extract, 0.3% malt extract, 0.5% peptone and 1% glucose) and YPD medium (1% yeast extract, 2% peptone, 2% glucose). Luria-Bertani medium containing ampicillin (100 μg/ml) was used to cultivate E. coli. The minimal medium containing 1% glucose and 0.67% yeast nitrogen base (YNB) without amino acids was used to select the yeast transformants. YPM medium was prepared by replacing the glucose of YPD with maltose. The medium used to investigate expression induction, contained 1% yeast extract, 1% casamino acid, and 2% glucose or maltose.
Expression vector for H. fabianii J640
Transformation of yeast
Transformations were carried out by electroporation as described by (Becker et al. 1991). Electroporation was done with a Gene Pulser (Bio-Rad) with settings of 200 V and 25 μF using a 0.2 cm cuvette.
Assay of xylanase and α-amylase activity
Xylanase activity was assayed by measuring the amount of reducing sugar liberated from xylan (Iefuji et al. 1996b). One unit of activity was defined as the amount of xylanase needed to liberate 1 μmol of D-xylose per min under the condition just described.
α-Amylase activity was measured with an α-amylase kit (Kikkoman). One unit of α-amylase activity was defined as the amount of enzyme which forms 1 μmol of 2-choloro-4-nitrophenol from 2-choloro-4-nitrophenyl 65-azide-65-deoxy-β- maltopentaoside under the condition described above.
Preparation of model wastewater and treatment test
Model wastewater containing soluble starch was made with 1% refined starch (Merck) and 0.25% yeast extract, pH 6.0. The starch was solubilized by autoclaving. Model wastewater containing insoluble starch was made with 0.25% yeast extract, pH6.0, autoclaved and cooled to approximately 55°C. The same amount of starch was sterilized in 70% ethanol. The suspension was centrifuged and decanted. The starch pellet was then added to the autoclaved yeast extract solution.
Yeast cells were incubated at 30°C for 2 days on YM medium. Then 5 × 106 cells/ml was inoculated to the model wastewater in an Erlenmeyer flask. Cultures were incubated at 30°C with shaking at 105 rpm and samples were periodically harvested.
Yeast cells in the model wastewater were counted with a hemocytometer
The model wastewater containing soluble starch was centrifuged at 3000 rpm for 10 min, and chemical oxygen demand (COD) of the supernatant was measured. The decrease in COD of the model wastewater containing soluble starch was used to express the capacity of the yeast to treat the wastewater.
It was not possible to measure COD of the model wastewater containing insoluble starch because of the difficulty in separating the cells and insoluble starch. In this case, degradation of the starch was measured with the iodo-starch reaction (Sato et al. 1987) as follows: 1 ml culture was heated in a micro tube at 100°C for 30 min to solubilize the starch. Yeast cells were then removed by centrifugation. Iodic liquid (0.2 ml; containing 0.0317 g iodine, 0.1 g potassium iodide and 5 ml 3N-HCl in 100 ml water) was added to the supernatant and the optical density was measured at 670 nm. Transmittance at 670 nm was taken as a measure of starch degradation.
Monitoring the presence of a foreign gene in a transformant
The transformants were cultured in 10 ml YM medium and harvested by centrifugation. DNA was extracted with an Easy-DNA kit (Invitrogen) and used for the PCR template. Unique PCR primers were designed, and the position of the PCR product is shown in Figure 1B. PCR cycling conditions were followed by 25 cycles of 94°C for 1 min, 55°C for 2 min, 72°C for 3 min.
To determine the sensitivity of the PCR, cells were cultured in YM medium, and the cell density was measured. Then a dilution series was made (106-101 cells/ml). One ml of each dilution was harvested and DNA was extracted with the EASY-DNA kit and used as a PCR template.
Induction of foreign gene expression
Effect of media components on xylanase activity
Xylanase activity (U/ml)
Maltose, YNB w/o amino acids
Maltose, Yeast extract, Casamino acid
Glucose, YNB w/o amino acids
Glucose, Yeast extract, Casamino acid
Comparison of two vectors
Treatment of model wastewater
Monitoring of transformant by PCR
We developed a host vector system for the wastewater treatment yeast, H. fabianii J 640, and we created new wastewater treatment yeast transformants (HF-XYN and HF-AAMY). The expression of the foreign gene that was integrated in the transformant was induced by maltose and repressed by glucose. However, the growth rates of the transformants carrying pHFGE-1 and the widely used pG-1 were the same and both transformants strongly expressed the foreign gene, even in medium containing glucose, which was expected to repress expression of the foreign gene. Our host vector system strongly expresses the foreign gene. Because wastewater contains various components, the strong expression of the new strain is an advantage. The HF-AAMY cells were effective in treating the model wastewater.
Because HF-AAMY cells are genetically modified, a sensitive method for monitoring the cells in the environment is needed. Our PCR was shown to satisfy this requirement.
A host vector system was also developed for the methylotrophic yeast Hansenula polymorpha (Gellissen et al. 2004, Steinborn et al. 2006). As in these systems, auxotrophic strains (ura-, leu-) were used as the host. The expression cassettes in these systems used the promoters for various genes, including the genes for formate dehydrogenase (FMD), methanol oxidase (MOX), and trehalose-6-phosphate synthase (TPS1). H. polymorpha is rapidly becoming the system of choice for heterologous gene expression in yeast. Several production processes for recombinant pharmaceuticals and industrial enzymes have been developed based on gene expression in this strain. Another methylotrophic yeast, Hansenula ofunaensis, has also been evaluated for a transformation system (Yamada-Onodera et al. 1999, Yamada-Onodera et al. 2006) but development has not been completed.
A transformation system using Hansenula anomala, another wastewater treatment yeast, was developed in the 1990s (Ogata et al. 1992, Ogata et al. 1995). However, none of these studies of wastewater treatment yeasts constructed an expression vector or bred new strains of yeast. With the new transformation system, it should be possible to treat wastewater containing polysaccharides that are presently resistant to degradation.
Our next goal is to use our transformant to treat real wastewater from the food industry. In the future, when genetically engineered yeast is proven to be effective for the treatment of wastewater, a major task will be to prove to the public that the methodology is safe.
- Becker DM, Guarente L: High-efficiency transformation of yeast by electroporation. Methods Enzymol 1991, 194: 182–187.PubMedView ArticleGoogle Scholar
- Gellissen G, Hollenberg CP: Encyclopedia of Food Microbiology. Hansenula 2004, 976–982.Google Scholar
- Iefuji H, Iimura Y, Obata T: Isolation and characterization of a yeast Cryptococcus sp. S-2 that produces raw starch-digesting α-amylase, xylanase, and polygalacturonase. Biosci Biotechnol Biochem 1994, 58: 2261–2262. 10.1271/bbb.58.2261View ArticleGoogle Scholar
- Iefuji H, Chino M, Kato M, Iimura Y: Raw-starch-digesting and thermostable α-amylase from the yeast Cryptococcus sp. S-2: purification, characterization, cloning and sequencing. Biochem J 1996, 318: 989–996.PubMed CentralPubMedGoogle Scholar
- Iefuji H, Chino M, Kato M, Iimura Y: Acid xylanase from yeast Cryptococcus sp. S-2: purification, characterization, cloning, and sequencing. Biosci Biotechnol Biochem 1996, 60: 1331–1338. 10.1271/bbb.60.1331PubMedView ArticleGoogle Scholar
- Kamini NR, Fujii T, Kurosu T, Iefuji H: Production, purification and characterization of an extracellular lipase from the yeast, Cryptococcus sp. S-2. Process Biochem 2000, 36: 317–324. 10.1016/S0032-9592(00)00228-4View ArticleGoogle Scholar
- Kato M, Iefuji H, Miyake K, Iimura Y: Transformation system for a wastewater treatment yeast, Hansenula fabianii J640: isolation of the orotidine-5'-phosphate decarboxylase gene (URA3) and uracil auxotrophic mutants. Appl Microbiol Biotechnol 1997, 48: 621–625. 10.1007/s002530051105PubMedView ArticleGoogle Scholar
- Kato M, Kitajima T, Iefuji H: Isolation and characterization of glucoamylase from a wastewater treatment yeast Hansenula fabianii J640, and construction of expression vector. Appl Microbiol Biotechnol, in press.Google Scholar
- Moriya K, Iefuji H, Shimoi H, Sato S, Tadenuma M: Treatment of distillery wastewater discharged from beet molasses-spirits production using yeast. J Ferment Bioeng 1990, 69: 138–140. 10.1016/0922-338X(90)90204-AView ArticleGoogle Scholar
- Ogata T, Iimura Y, Obata T, Tamura G: Isolation and nucleotide sequence of Hansenula anomala URA3 gene encoding orotidine-5'- phosphate decarboxylase. J Ferment Bioeng 1992, 74: 352–357. 10.1016/0922-338X(92)90030-XView ArticleGoogle Scholar
- Ogata T, Okumura Y, Iimura Y, Obata T: Development of an integrative DNA transformation system for the yeast Hansenula anomala . J Ferment Bioeng 1995, 79: 1–5. 10.1016/0922-338X(95)92734-TView ArticleGoogle Scholar
- Saito K, Nakao T, Shima Y, Shimoi H, Sato S, Tadenuma M: Utilization of waste water discharged from pot-still during spirits-making. J Brew Soc Jpn 1987, 82: 444–446.View ArticleGoogle Scholar
- Sato S, Maetani T, Yamamoto N, Hasuo T, Tadeuma M, Yoshizawa K: Selection of flocculent yeast and its application to waste water treatment. J Brew Soc Jpn 1986, 81: 621–625.View ArticleGoogle Scholar
- Sato S, Otani M, Shimoi H, Saito K, Tadenuma M: Selection of flocculent mutants of waste water treatment utilization of wild yeasts. J Brew Soc Jpn 1987, 82: 515–519.View ArticleGoogle Scholar
- Schena M, Picard D, Yamamoto KR: Vectors for constitutive and inducible gene expression in yeast. Methods Enzymol 1991, 194: 389–398.PubMedView ArticleGoogle Scholar
- Steinborn G, Böer E, Scholz A, Tag K, Kunze G, Gellissen G: Application of a wide-range yeast vector (CoMed™) system to recombinant protein production in dimorphic Arxula adeninivorans , methylotrophic Hansenula polymorpha and other yeasts. Microb Cell Fact 2006, 5: 33. 10.1186/1475-2859-5-33PubMed CentralPubMedView ArticleGoogle Scholar
- Suzuki O, Sato S, Iefuji H, Shimoi H, Tadenuma M, Yoshizawa K: Utilization of thermotolerant and flocculent yeast for wastewater treatment. Hokkokogaku Kaishi 1991, 69: 83–87.Google Scholar
- Suzuki O, Kobari O, Iefuji H, Akita O: Breeding of yeast for waste water treatment by protoplast fusion. J Brew Soc Jpn 1996, 91: 521–526.View ArticleGoogle Scholar
- Yamada-Onodera K, Ono K, Tani Y: Purification and characterization of an enzyme that has dihydroxyacetone-reducing activity from methanol-grown Hansenula ofunaensis . J Biosci Bioeng 1999, 88: 148–152. 10.1016/S1389-1723(99)80193-5PubMedView ArticleGoogle Scholar
- Yamada-Onodera K, Nakajima A, Tani Y: Purification, characterization, and gene cloning of glycerol dehydrogenase from Hansenula ofunaensis , and its expression for production of optically active diol. J Biosci Bioeng 2006, 102: 545–551. 10.1263/jbb.102.545PubMedView ArticleGoogle Scholar
- Yoshizawa K: Treatment of waste-water discharged from a Sake' brewery using yeast. J Ferment Technol 1978, 56: 389–395.Google Scholar
- Yoshizawa K: Development of the new treating methods of waste water from food industry using yeast. Nippon Nogeikagaku kaishi 1981, 55: 705–711.View ArticleGoogle Scholar
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