Table 1 The top 20 up- and down-regulated genes in biofilm samples, respectively
Gene_id | Gene | Log2FC (PAO_B/PAO_P) | PAO_B | PAO_P | Gene description |
|---|---|---|---|---|---|
PA0688 | lapA | 11.32 | 6237.32 | 2.60 | Alkaline phosphatase L |
PA3219 | PA3219 | 9.85 | 395.65 | 0.46 | Hypothetical protein |
PA0842 | PA0842 | 9.60 | 451.26 | 0.62 | Glycosyl transferase family protein |
PA3383 | PA3383 | 9.18 | 767.95 | 1.42 | Phosphonate ABC transporter substrate-binding protein |
PA0691 | PA0691 | 8.94 | 203.30 | 0.45 | Hypothetical protein |
PA4382 | PA4382 | 8.72 | 442.90 | 1.13 | Hypothetical protein |
PA3382 | phnE | 8.71 | 267.00 | 0.69 | Phosphonate transporter PhnE |
PA4350 | PA4350 | 8.65 | 1004.08 | 2.68 | Hypothetical protein |
PA3380 | PA3380 | 8.29 | 243.00 | 0.83 | Hypothetical protein |
PA4623 | PA4623 | 8.17 | 2857.47 | 10.66 | Hypothetical protein |
PA3378 | PA3378 | 8.11 | 284.24 | 1.09 | Hypothetical protein |
PA3381 | PA3381 | 8.09 | 203.83 | 0.80 | Transcriptional regulator |
PA3376 | PA3376 | 8.01 | 188.62 | 0.79 | Phosphonate C-P lyase system protein PhnK |
PA3280 | oprO | 8.01 | 1907.03 | 7.95 | Pyrophosphate-specific outer membrane porin OprO |
PA3377 | PA3377 | 8.00 | 374.09 | 1.57 | Hypothetical protein |
PA3384 | phnC | 7.99 | 406.79 | 1.71 | Phosphonate ABC transporter ATP-binding protein |
PA0692 | PA0692 | 7.97 | 218.80 | 0.93 | Hypothetical protein |
PA4354 | PA4354 | 7.96 | 8259.51 | 36.35 | Hypothetical protein |
PA0694 | exbD2 | 7.96 | 260.44 | 1.14 | Transporter ExbD |
PA2803 | PA2803 | 7.95 | 159.82 | 0.70 | Hypothetical protein |
PA1555.1 | ccoQ2 | − 4.94 | 72.06 | 2569.51 | Cytochrome C oxidase cbb3-type subunit CcoQ |
PA5171 | arcA | − 4.96 | 127.12 | 4229.36 | Arginine deiminase |
PA5373 | betB | − 4.99 | 27.43 | 927.48 | Betaine aldehyde dehydrogenase |
PA5172 | arcB | − 5.00 | 94.84 | 3244.08 | Ornithine carbamoyltransferase |
PA0516 | nirF | − 5.01 | 31.55 | 1090.83 | Heme d1 biosynthesis protein NirF |
PA4221 | fptA | − 5.10 | 4.54 | 165.71 | Fe(III)-pyochelin outer membrane receptor |
PA0518 | nirM | − 5.11 | 39.30 | 1493.16 | Cytochrome C-551 |
PA0049 | PA0049 | − 5.19 | 3.95 | 153.21 | Hypothetical protein |
PA5173 | arcC | − 5.31 | 73.26 | 3107.41 | Carbamate kinase |
PA0519 | nirS | − 5.41 | 60.36 | 2744.40 | Nitrite reductase |
PA2109 | PA2109 | − 5.86 | 1.75 | 107.96 | Hypothetical protein |
PA5372 | betA | − 5.99 | 3.10 | 209.46 | Choline dehydrogenase |
PA4225 | pchF | -6.37 | 1.61 | 141.55 | Pyochelin synthetase |
PA4230 | pchB | − 6.48 | 1.44 | 144.11 | Isochorismate-pyruvate lyase |
PA4888 | desB | − 6.94 | 1.23 | 160.81 | Acyl-CoA desaturase |
PA2114 | PA2114 | − 7.02 | 4.57 | 631.58 | Major facilitator superfamily transporter |
PA2111 | PA2111 | − 7.26 | 5.09 | 835.52 | Hypothetical protein |
PA4889 | PA4889 | − 7.30 | 1.52 | 256.77 | Oxidoreductase |
PA2113 | opdO | − 7.94 | 1.88 | 492.54 | Pyroglutatmate porin OpdO |
PA2112 | PA2112 | − 7.96 | 2.10 | 561.56 | Hypothetical protein |