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Table 1 Sixteen genome libraries generated from combination of eight adaptors sequences randomly digested by MnlI restriction enzyme

From: Identification of stress-responsive transcription factors with protein-bound Escherichia coli genomic DNA libraries

No

Genome library names

Adaptor combinationa

5′Adaptor name

5′ Adaptor sequence

3′ Adaptor name

3′ Adaptor sequence

1

AA

5AA-3AA

5AA

5′ ATGGATAGGTCGGTGA 3′ (R1S)

3′A-TACCTATCCAGCCACT 5′ (F1A)

3AA

5′ GACGCACCTTGAGGC 3′ (R2S)

3′A-CTGCGTGGAACTCCG 5′ (F2A)

2

AT

5AA-3AT

3AT

5′ GACGCACCTTGAGGC 3′ (R2S)

3′T-CTGCGTGGAACTCCG 5′ (F2T)

3

AG

5AA-3AG

3AG

5′ GACGCACCTTGAGGC 3′ (R2S)

3′G-CTGCGTGGAACTCCG 5′ (F2G)

4

AC

5AA-3AC

3AC

5′ GACGCACCTTGAGGC 3′ (R2S)

3′C-CTGCGTGGAACTCCG 5′ (F2C)

5

TA

5TA-3AA

5TA

5′ ATGGATAGGTCGGTGA 3′ (R1S)

3′T-TACCTATCCAGCCACT 5′ (F1T)

3AA

5′ GACGCACCTTGAGGC 3′ (R2S)

3′A-CTGCGTGGAACTCCG 5′ (F2A)

6

TT

5TA-3AT

3AT

5′ GACGCACCTTGAGGC 3′ (R2S)

3′T-CTGCGTGGAACTCCG 5′ (F2T)

7

TG

5TA-3AG

3AG

5′ GACGCACCTTGAGGC 3′ (R2S)

3′G-CTGCGTGGAACTCCG 5′ (F2G)

8

TC

5TA-3AC

3AC

5′ GACGCACCTTGAGGC 3′ (R2S)

3′C-CTGCGTGGAACTCCG 5′ (F2C)

9

GA

5GA-3AA

5GA

5′ ATGGATAGGTCGGTGA 3′ (R1S)

3′G-TACCTATCCAGCCACT 5′ (F1G)

3AA

5′ GACGCACCTTGAGGC 3′ (R2S)

3′A-CTGCGTGGAACTCCG 5′ (F2A)

10

GT

5GA-3AT

3AT

5′ GACGCACCTTGAGGC 3′ (R2S)

3′T-CTGCGTGGAACTCCG 5′ (F2T)

11

GG

5GA-3AG

3AG

5′ GACGCACCTTGAGGC 3′ (R2S)

3′G-CTGCGTGGAACTCCG 5′ (F2G)

12

GC

5GA-3AC

3AC

5′ GACGCACCTTGAGGC 3′ (R2S)

3′C-CTGCGTGGAACTCCG 5′ (F2C)

13

CA

5CA-3AA

5CA

5′ ATGGATAGGTCGGTGA 3′ (R1S)

3′C-TACCTATCCAGCCACT 5′ (F1C)

3AA

5′ GACGCACCTTGAGGC 3′ (R2S)

3′A-CTGCGTGGAACTCCG 5′ (F2A)

14

CT

5CA-3AT

3AT

5′ GACGCACCTTGAGGC 3′ (R2S)

3′T-CTGCGTGGAACTCCG 5′ (F2T)

15

CG

5CA-3AG

3AG

5′ GACGCACCTTGAGGC 3′ (R2S)

3′G-CTGCGTGGAACTCCG 5′ (F2G)

16

CC

5CA-3AC

3AC

5′ GACGCACCTTGAGGC 3′ (R2S)

3′C-CTGCGTGGAACTCCG 5′ (F2C)

  1. a Each adaptor was abbreviated with 5AA (5′ adaptor A), 5AT (5′ adaptor T), 5AG (3′ adaptor G), etc. 5′ adaptors are annealed with shared sequence R1S while 3′ adaptors were annealed with sharded sequence R2S. Each 5′ adaptor was combined with each 3′ adaptor to create a total of 16 genome libraries