1
|
S. Sinstorf
|
Feces
|
−
|
−
|
−
|
oqxA, oqxB, aac(6′)-Ib, sul1, sul2, tetA, tetG, catA1, floR
|
2 Oct 2016
|
2
|
S. Typhimurium
|
Liver
|
+
|
+
|
+
|
blapsE-1, tetG, catA1
|
2 Oct 2016
|
3
|
S. Typhimurium
|
Ileum
|
+
|
+
|
+
|
blapsE-1, tetG, catA1
|
2 Oct 2016
|
4
|
S. Typhimurium
|
Ileum
|
+
|
−
|
−
|
qnrS, oqxB, blatem, tetA, floR, catA1
|
2 Oct 2016
|
5
|
S. Rissen
|
Ileum
|
+
|
−
|
−
|
qepA, sul2, tetA
|
2 Oct 2016
|
6
|
S. Derby
|
Liver
|
+
|
−
|
−
|
qepA, oqxB, aac(6′)-Ib, blaoxA-1, tetA, tetG, floR, dfrA1
|
22 Oct 2016
|
7
|
S. Sinstorf
|
Liver
|
+
|
−
|
−
|
oqxA, aac(6′)-Ib, blaCMY-2, tetA, tetG, floR, dfrA1
|
23 Oct 2016
|
8
|
S. Rissen
|
Ileum
|
+
|
−
|
−
|
qepA, oqxB, blatem, tetA, catA1, dfrA1
|
23 Oct 2016
|
9
|
S. Sinstorf
|
Liver
|
−
|
−
|
−
|
oqxA, oqxB, aac(6′)-Ib, tetA, tetG, catA1, floR, dfrA1
|
23 Oct 2016
|
10
|
S. Derby
|
Liver
|
+
|
−
|
−
|
qepA, aac(6′)-Ib, blaoxA-1, tetA, dfrA1
|
23 Oct 2016
|
11
|
S. Derby
|
Liver
|
+
|
−
|
−
|
oqxA, oqxB, tetA, dfrA1
|
4 Dec 2016
|
12
|
S. Newlands
|
Ileum
|
−
|
−
|
−
|
tetA
|
4 Dec 2016
|
13
|
S. Newlands
|
Ileum
|
−
|
−
|
−
| |
4 Dec 2016
|
14
|
S. Newlands
|
Ileum
|
−
|
−
|
−
|
catA1
|
4 Dec 2016
|
15
|
S. Derby
|
Ileum
|
+
|
−
|
−
|
aac(6′)-Ib, blatem, aadA1, floR
|
4 Dec 2016
|
16
|
S. Derby
|
Ileum
|
+
|
−
|
−
|
aac(6′)-Ib, aadA1
|
4 Dec 2016
|
17
|
S. Derby
|
Ileum
|
+
|
−
|
−
|
aac(6′)-Ib, aadA1
|
10 Dec 2016
|
18
|
S. Typhimurium
|
Ileum
|
+
|
−
|
−
|
qnrB, oqxA, oqxB, tetB, floR, catA1, aadA1
|
10 Dec 2016
|
19
|
S. Derby
|
Ileum
|
+
|
−
|
−
|
aac(6′)-Ib
|
10 Dec 2016
|
20
|
S. Derby
|
Ileum
|
+
|
−
|
−
| |
10 Dec 2016
|
21
|
S. Derby
|
Ileum
|
+
|
−
|
−
|
tetA
|
10 Dec 2016
|
22
|
S. Newlands
|
Ileum
|
−
|
−
|
−
|
tetA
|
10 Dec 2016
|
23
|
S. Newlands
|
Ileum
|
−
|
−
|
−
| |
10 Dec 2016
|
24
|
S. Derby
|
Liver
|
+
|
−
|
−
|
tetA
|
26 Dec 2016
|
25
|
S. Newlands
|
Feces
|
−
|
−
|
−
|
dfrA1
|
26 Dec 2016
|
26
|
S. Derby
|
Ileum
|
+
|
−
|
−
|
oqxA, aac(6′)-Ib, sul1, sul2, blaoxA-1, tetA, aadA1, floR
|
26 Dec 2016
|
27
|
S. Typhimurium
|
Ileum
|
+
|
−
|
−
|
qnrS, oqxB, blatem, tetA, floR, catA1
|
26 Dec 2016
|
28
|
S. Rissen
|
Ileum
|
+
|
−
|
−
|
tetA, aadA1, catA1
|
26 Dec 2016
|
29
|
S. Typhimurium
|
Ileum
|
+
|
−
|
−
|
qnrS, oqxB, blatem, tetA, floR, catA1
|
26 Dec 2016
|
30
|
S. Derby
|
Liver
|
+
|
−
|
−
|
oqxA, sul2, blatem, tetA, aadA1, catA1, dfrA1
|
14 Jan 2017
|
31
|
S. Derby
|
Liver
|
+
|
−
|
−
|
oqxA, sul2, blatem, tetA, aadA1, dfrA1
|
14 Jan 2017
|
32
|
S. Derby
|
Liver
|
+
|
−
|
−
|
oqxA, tetA, aadA1, dfrA1
|
14 Jan 2017
|
33
|
S. Newlands
|
Ileum
|
−
|
−
|
−
|
sul2, blapsE-1, tetA, catA1, floR
|
14 Jan 2017
|
34
|
S. Rissen
|
Ileum
|
−
|
−
|
−
|
sul2, catA1
|
25 Feb 2017
|
35
|
S. Newlands
|
Ileum
|
−
|
−
|
−
|
sul2, tetA, aadA1, floR
|
25 Feb 2017
|
36
|
S. Derby
|
Ileum
|
+
|
−
|
−
|
oqxA, aac(6′)-Ib, sul1, sul2, blaoxA-1, blapsE-1, tetA, aadA1, floR
|
25 Feb 2017
|
37
|
S. Nchanga
|
Ileum
|
−
|
−
|
−
|
sul2, blapsE-1, catA1, floR
|
25 Feb 2017
|
38
|
S. Derby
|
Ileum
|
+
|
−
|
−
|
oqxA, sul1, sul2, blaoxA-1, blapsE-1, tetA, aadA1, floR
|
25 Feb 2017
|
39
|
S. Derby
|
Ileum
|
+
|
−
|
−
|
oqxA, aac(6′)-Ib, sul1, sul2, blaoxA-1, tetA, aadA1, floR
|
25 Feb 2017
|
40
|
S. Derby
|
Ileum
|
+
|
−
|
−
|
oqxA, aac(6′)-Ib, sul1, sul2, blaoxA-1, tetA, aadA1, floR
|
25 Feb 2017
|
41
|
S. Newlands
|
Ileum
|
−
|
−
|
−
| |
25 Feb 2017
|
42
|
S. Derby
|
Liver
|
+
|
−
|
−
|
aac(6′)-Ib, blaoxA-1, tetA
|
2 Apr 2017
|
43
|
S. Newlands
|
Ileum
|
+
|
−
|
−
|
sul2, tetA, aadA1, floR
|
2 Apr 2017
|
44
|
S. Derby
|
Liver
|
+
|
−
|
−
|
tetA, aadA1, catA1
|
22 Apr 2017
|
45
|
S. Derby
|
Ileum
|
+
|
−
|
−
|
aadA1
|
22 Apr 2017
|
46
|
S. Derby
|
Ileum
|
+
|
−
|
−
|
tetA
|
22 Apr 2017
|
47
|
S. Newlands
|
Ileum
|
−
|
−
|
−
| |
22 Apr 2017
|
48
|
S. Rissen
|
Ileum
|
+
|
−
|
−
|
sul2, blatem, tetA, aadA1, catA1
|
22 Apr 2017
|
49
|
S. Rissen
|
Ileum
|
+
|
−
|
−
|
Blatem, tetA, aadA1, catA1
|
22 Apr 2017
|
50
|
S. Rissen
|
Ileum
|
+
|
−
|
−
|
Blatem, tetA, aadA1, catA1
|
22 Apr 2017
|
51
|
S. Rissen
|
Ileum
|
+
|
−
|
−
|
Blatem, tetA, aadA1, catA1
|
22 Apr 2017
|
52
|
S. Rissen
|
Ileum
|
+
|
−
|
−
|
Blatem, tetA, aadA1, catA1
|
22 Apr 2017
|
53
|
S. Derby
|
Ileum
|
+
|
−
|
−
|
Blatem, tetA, aadA1, catA1, floR
|
22 Apr 2017
|
54
|
S. Rissen
|
Ileum
|
+
|
−
|
−
|
Blatem, tetA, aadA1, catA1, dfrA1
|
22 Apr 2017
|
55
|
S. Rissen
|
Ileum
|
+
|
−
|
−
|
Blatem, tetA, aadA1, catA1
|
22 Apr 2017
|
56
|
S. Rissen
|
Ileum
|
+
|
−
|
−
|
Blatem, tetA, aadA1, catA1
|
22 Apr 2017
|
57
|
S. Rissen
|
Ileum
|
+
|
−
|
−
|
Blatem, tetA, aadA1, catA1
|
22 Apr 2017
|
58
|
S. Rissen
|
Ileum
|
+
|
−
|
−
|
sul2, blatem, tetA, aadA1, catA1, dfrA1
|
22 Apr 2017
|
59
|
S. Derby
|
Ileum
|
+
|
−
|
−
|
sul2, tetA, aadA1, catA1
|
22 Apr 2017
|
60
|
S. Derby
|
Liver
|
+
|
−
|
−
|
tetA, aadA1, catA1, floR
|
20 May 2017
|
61
|
S. Derby
|
Ileum
|
+
|
−
|
−
|
tetA
|
20 May 2017
|
62
|
S. Rissen
|
Ileum
|
+
|
−
|
−
|
qnrS, blatem, tetA
|
20 May 2017
|
63
|
Untyped
|
Ileum
|
+
|
−
|
−
|
blatem, tetA
|
20 May 2017
|
64
|
S. Derby
|
Ileum
|
+
|
−
|
−
|
tetA
|
17 Jul 2017
|
65
|
S. Nchanga
|
Ileum
|
+
|
−
|
−
|
aac(6′)-Ib, tetA
|
17 Jul 2017
|
66
|
S. Derby
|
Ileum
|
+
|
−
|
−
|
tetA
|
20 Oct 2017
|
67
|
S. Derby
|
Ileum
|
+
|
−
|
−
| |
20 Oct 2017
|
68
|
S. Derby
|
Ileum
|
+
|
−
|
−
|
catA1
|
20 Oct 2017
|
69
|
S. Derby
|
Ileum
|
+
|
−
|
−
| |
20 Oct 2017
|
70
|
S. Derby
|
Liver
|
+
|
−
|
−
| |
22 Oct 2017
|
71
|
S. Derby
|
Ileum
|
+
|
−
|
−
| |
22 Oct 2017
|
72
|
S. Nchanga
|
Ileum
|
−
|
−
|
−
|
qnrS, sul2, blapsE-1, tetA, aadA1, catA1, floR
|
22 Oct 2017
|
73
|
S. Rissen
|
Ileum
|
+
|
−
|
−
|
aadA1, catA1
|
22 Oct 2017
|
74
|
S. Derby
|
Ileum
|
+
|
−
|
−
| |
22 Oct 2017
|
75
|
S. Chester
|
Ileum
|
+
|
−
|
−
|
tetB, catA1
|
22 Oct 2017
|
76
|
S. Chester
|
Ileum
|
+
|
−
|
−
|
tetB, catA1
|
22 Oct 2017
|
77
|
S. Derby
|
Ileum
|
+
|
−
|
−
|
oqxA, aac(6′)-Ib, sul1, sul2, blaoxA-1, blapsE-1, tetA, aadA1, catA1, floR
|
22 Oct 2017
|
78
|
S. Typhimurium
|
Ileum
|
+
|
−
|
−
|
sul2, tetB, catA1
|
28 Oct 2017
|
79
|
S. Typhimurium
|
Ileum
|
+
|
−
|
−
|
sul2, tetB, catA1
|
28 Oct 2017
|
80
|
S. Typhimurium
|
Ileum
|
+
|
−
|
−
|
sul2, tetB, catA1
|
28 Oct 2017
|