Salmonella spp. detection primer sets
|
stn-F
|
5′-CTTTGGTCGTAAAATAAGGCG-3′
|
260
|
stn-R
|
5′-TGCCCAAAGCAGAGAGATTC-3′
|
hut-F
|
5′-ACTGGCGTTATCCCTTTCTCTGCTG-3′
|
495
|
hut-R
|
5′-ATGTTGTCCTGCCCCTGGTAAGAGA-3′
|
16S rRNA primer set
|
27F
|
5′-AGAGTTTGATCCTGGCTCAG-3′
|
1466
|
1492R
|
5′-TACGGTTACCTTGTTACGACTT-3′
|
Antimicrobial resistance gene primer sets
| |
Quinolones
|
qnrA-F
|
5′-TTCAGCAAGAGGATTTCTCA-3′
|
500
|
qnrA-R
|
5′-GGCAGCACTATTACTCCCAA -3′
|
qnrB-F
|
5′-CCTGAGCGGCACTGAATTTT-3′
|
617
|
qnrB-R
|
5′-GTTTGCTGCTCGCCAGTCGA-3′
|
qnrC-F
|
5′-GGGTTGTACATTTATTGAATC-3′
|
447
|
qnrC-R
|
5′-TCCACTTTACGAGGTTCT-3′
|
qnrD-F
|
5′-TTACGGGGAATAGAGTTA-3′
|
468
|
qnrD-R
|
5′-AATCAGCCAAAGACCAAT-3′
|
qnrS-F
|
5′-ACATAAAGACTTAAGTGATC-3′
|
619
|
qnrS-R
|
5′-CAATTAGTCAGGATAAAC-3′
|
qepA-F
|
5′-CCAGCTCGGCAACTTGATAC-3′
|
570
|
qepA-R
|
5′-ATGCTCGCCTTCCAGAAAA-3′
|
oqxA-F
|
5′-CTCGGCGCGATGATGCTC-3′
|
392
|
oqxA-R
|
5′-CACTCTTCACGGGAGACGA-3′
|
oqxB-F
|
5′-TTCTCCCCCGGGGGGAAGTCCTCGGC-3′
|
512
|
oqxB-R
|
5′-CATTTTGGCGCGTA-3′
|
Aminoglycosides
|
aac(6′)-Ib-F
|
5′-TTGCGATGCTCTATGAGTGGCTA-3′
|
482
|
aac(6′)-Ib-R
|
5′-CTCGAATGCCTGGCGTGTT-3′
|
aadA1-F
|
5′-GCGCCATCTCGAACCGACGTT-3′
|
573
|
aadA1-R
|
5′-GCCCAGTCGGCAGCGACATC-3′
|
Sulfonamides
|
sul1-F
|
5′-TGGCGTCGCGACTGCGAAAT-3′
|
813
|
sul1-R
|
5′-TGGTGACGGTGTTCGGCATTCT-3′
|
sul2-F
|
5′-GTTTCTCCGATGGAGGCCGGT-3′
|
517
|
sul2-R
|
5′-AGCGAGGTTTCGGGAGCAGC-3′
|
Trimethoprim
|
dfrA1-F
|
5′-AGTGCCAAAGGTGAACAGCTCCT-3′
|
308
|
dfrA1-R
|
5′-ACATCACCTTCCGGCTCGATGTCT-3′
|
β-lactamase
|
blaOXA-1-F
|
5′-ATGAAAAACACAATACATATC-3′
|
830
|
blaOXA-1-R
|
5′-AATTTAGTGTGTTTAGAATGG-3′
|
blaPSE-1-F
|
5′-CGCTTCCCGTTAACAAGTAC-3′
|
420
|
blaPSE-1-R
|
5′-CTGGTTCATTTCAGATAGCG-3′
|
blaTEM-F
|
5′-ATAAAATTCTTGAAGACGAAA-3′
|
1080
|
blaTEM-R
|
5′-GACAGTTACCAATGCTTAATC-3′
|
BlaCMY-2-F
|
5′-TGGCGGTTGCCGTTATCTAC-3′
|
210
|
BlaCMY-2-R
|
5′-CCCGTTTTATGCACCCATGA-3′
|
Tetracyclines
|
tetA-F
|
5′-TGGTCCGGAGGCCAGACGTG-3′
|
867
|
tetA-R
|
5′-TTCCGAGCATGAGTGCCCGC-3′
|
tetB-F
|
5′-GGAGCTACTGGGGCTGTCGCACC-3′
|
374
|
tetB-R
|
5′-ACCCACACCGTTGCGGGAAT-3′
|
tetG-F
|
5′-TCTTGCAGGAGCCGCAGTCGAT-3′
|
721
|
tetG-R
|
5′-GGCCGGCATGCCAACACCC-3′
|
Chloramphenicols
|
catA1-F
|
5′-TCTTGCCCGCCTGATGAATGC-3′
|
388
|
catA1-R
|
5′-AACCTGAATCGCCAGCGGCA-3′
|
floR-F
|
5′-AACCCGCCCTCTGGATCAAGTCAA-3′
|
549
|
floR-R
|
5′-CAAATCACGGGCCACGCTGTATC-3′
|
Virulence gene primer sets
|
mogA-F
|
5′-ATTGGCTTAGTTTCTATCTCCG-3′
|
419
|
mogA-R
|
5′-CCTTCCAGCGTTTCTTTGA-3′
|
pvB-F
|
5′-CCGTAGAGCAGACGCTGTAAGC-3′
|
1856
|
spvB-R
|
5′-GTATCTATGAGTTGAGTACCCCTATG-3′
|
spvC-F
|
5′-CCGCAAAGTAGTGCATCTAAAC-3′
|
919
|
spvC-R
|
5′-CCATACTTACTCTGTCATCAAACG-3′
|