| Salmonella spp. detection primer sets |
| stn-F | 5′-CTTTGGTCGTAAAATAAGGCG-3′ | 260 |
| stn-R | 5′-TGCCCAAAGCAGAGAGATTC-3′ |
| hut-F | 5′-ACTGGCGTTATCCCTTTCTCTGCTG-3′ | 495 |
| hut-R | 5′-ATGTTGTCCTGCCCCTGGTAAGAGA-3′ |
| 16S rRNA primer set |
| 27F | 5′-AGAGTTTGATCCTGGCTCAG-3′ | 1466 |
| 1492R | 5′-TACGGTTACCTTGTTACGACTT-3′ |
| Antimicrobial resistance gene primer sets | |
| Quinolones |
| qnrA-F | 5′-TTCAGCAAGAGGATTTCTCA-3′ | 500 |
| qnrA-R | 5′-GGCAGCACTATTACTCCCAA -3′ |
| qnrB-F | 5′-CCTGAGCGGCACTGAATTTT-3′ | 617 |
| qnrB-R | 5′-GTTTGCTGCTCGCCAGTCGA-3′ |
| qnrC-F | 5′-GGGTTGTACATTTATTGAATC-3′ | 447 |
| qnrC-R | 5′-TCCACTTTACGAGGTTCT-3′ |
| qnrD-F | 5′-TTACGGGGAATAGAGTTA-3′ | 468 |
| qnrD-R | 5′-AATCAGCCAAAGACCAAT-3′ |
| qnrS-F | 5′-ACATAAAGACTTAAGTGATC-3′ | 619 |
| qnrS-R | 5′-CAATTAGTCAGGATAAAC-3′ |
| qepA-F | 5′-CCAGCTCGGCAACTTGATAC-3′ | 570 |
| qepA-R | 5′-ATGCTCGCCTTCCAGAAAA-3′ |
| oqxA-F | 5′-CTCGGCGCGATGATGCTC-3′ | 392 |
| oqxA-R | 5′-CACTCTTCACGGGAGACGA-3′ |
| oqxB-F | 5′-TTCTCCCCCGGGGGGAAGTCCTCGGC-3′ | 512 |
| oqxB-R | 5′-CATTTTGGCGCGTA-3′ |
| Aminoglycosides |
| aac(6′)-Ib-F | 5′-TTGCGATGCTCTATGAGTGGCTA-3′ | 482 |
| aac(6′)-Ib-R | 5′-CTCGAATGCCTGGCGTGTT-3′ |
| aadA1-F | 5′-GCGCCATCTCGAACCGACGTT-3′ | 573 |
| aadA1-R | 5′-GCCCAGTCGGCAGCGACATC-3′ |
| Sulfonamides |
| sul1-F | 5′-TGGCGTCGCGACTGCGAAAT-3′ | 813 |
| sul1-R | 5′-TGGTGACGGTGTTCGGCATTCT-3′ |
| sul2-F | 5′-GTTTCTCCGATGGAGGCCGGT-3′ | 517 |
| sul2-R | 5′-AGCGAGGTTTCGGGAGCAGC-3′ |
| Trimethoprim |
| dfrA1-F | 5′-AGTGCCAAAGGTGAACAGCTCCT-3′ | 308 |
| dfrA1-R | 5′-ACATCACCTTCCGGCTCGATGTCT-3′ |
| β-lactamase |
| blaOXA-1-F | 5′-ATGAAAAACACAATACATATC-3′ | 830 |
| blaOXA-1-R | 5′-AATTTAGTGTGTTTAGAATGG-3′ |
| blaPSE-1-F | 5′-CGCTTCCCGTTAACAAGTAC-3′ | 420 |
| blaPSE-1-R | 5′-CTGGTTCATTTCAGATAGCG-3′ |
| blaTEM-F | 5′-ATAAAATTCTTGAAGACGAAA-3′ | 1080 |
| blaTEM-R | 5′-GACAGTTACCAATGCTTAATC-3′ |
| BlaCMY-2-F | 5′-TGGCGGTTGCCGTTATCTAC-3′ | 210 |
| BlaCMY-2-R | 5′-CCCGTTTTATGCACCCATGA-3′ |
| Tetracyclines |
| tetA-F | 5′-TGGTCCGGAGGCCAGACGTG-3′ | 867 |
| tetA-R | 5′-TTCCGAGCATGAGTGCCCGC-3′ |
| tetB-F | 5′-GGAGCTACTGGGGCTGTCGCACC-3′ | 374 |
| tetB-R | 5′-ACCCACACCGTTGCGGGAAT-3′ |
| tetG-F | 5′-TCTTGCAGGAGCCGCAGTCGAT-3′ | 721 |
| tetG-R | 5′-GGCCGGCATGCCAACACCC-3′ |
| Chloramphenicols |
| catA1-F | 5′-TCTTGCCCGCCTGATGAATGC-3′ | 388 |
| catA1-R | 5′-AACCTGAATCGCCAGCGGCA-3′ |
| floR-F | 5′-AACCCGCCCTCTGGATCAAGTCAA-3′ | 549 |
| floR-R | 5′-CAAATCACGGGCCACGCTGTATC-3′ |
| Virulence gene primer sets |
| mogA-F | 5′-ATTGGCTTAGTTTCTATCTCCG-3′ | 419 |
| mogA-R | 5′-CCTTCCAGCGTTTCTTTGA-3′ |
| pvB-F | 5′-CCGTAGAGCAGACGCTGTAAGC-3′ | 1856 |
| spvB-R | 5′-GTATCTATGAGTTGAGTACCCCTATG-3′ |
| spvC-F | 5′-CCGCAAAGTAGTGCATCTAAAC-3′ | 919 |
| spvC-R | 5′-CCATACTTACTCTGTCATCAAACG-3′ |
