Matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF) score algorithm for identification of Gordonia species

Ercibengoa Arana, Maria; Alonso, Marta; Idigoras, Pedro; Vicente, Diego; Marimón, Jose María

doi:10.1186/s13568-018-0650-z

AMB Express

Table 1 Gordonia species identification by 16S rRNA gene sequencing and correlation with MALDI-TOF MS

From: Matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF) score algorithm for identification of Gordonia species

Laboratory coding number	Molecular identification (16S rRNA gene)	GenBank accession number	Score	MALDI-TOF MS first species in the identification ranking list	Identification according to
Laboratory coding number	Molecular identification (16S rRNA gene)	GenBank accession number	Score		Manufacturer’ scores	New scores
65206307	G. bronchialis	MH371019	1.899	G. bronchialis	Genus level	Species level
10999451	G. sputi	MH371338	1.864	G. sputi	Genus level	Species level
226573	G. sputi	MH368686	1.659	G. sputi	Unreliable identification	Genus level
228715	G. sputi	MH371337	1.633	G. rubripertincta	Unreliable identification	Genus level
234219	G. sputi	MH370805	2.05	G. sputi	Species level	Species level
239340	G. sputi	MH370806	1.742	G. sputi	Genus level	Species level
240919	G. sputi	MH370807	1.679	G. sputi	Unreliable identification	Genus level
241080	G. sputi	MH368687	1.703	G. sputi	Genus level	Species level
241362	G. sputi	MH370809	1.867	G. sputi	Genus level	Species level
241859	G. sputi	MH368688	2.12	G. sputi	Species level	Species level
241867	G. sputi	MH368689	1.549	G. rubripertincta	Unreliable identification	Genus level
241963	G. sputi	MH368690	1.72	G. sputi	Genus level	Species level
243347	G. sputi	MH370808	1.765	G. sputi	Genus level	Species level
243815	G. sputi	MH368691	1.768	G. sputi	Genus level	Species level
243837	G. sputi	MH368692	1.695	G. sputi	Unreliable identification	Genus level
245108	G. sputi	MH368693	1.64	G. sputi	Unreliable identification	Genus level
245419	G. sputi	MH368694	1.715	G. sputi	Genus level	Species level
240706	G. otitidis	MH371196	1.507	G. rubripertincta	Unreliable identification	Genus level
243669	G. otitidis	MH370799	1.674	G. aichiensis	Unreliable identification	Genus level
243814	G. otitidis	MH370800	1.638	G. rubripertincta	Unreliable identification	Genus level
245663	G. otitidis	MH370801	1.517	G. rubripertincta	Unreliable identification	Genus level

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