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Table 2 Lowest energy and smallest RMSD results of five compared algorithms

From: Genetic algorithm with a crossover elitist preservation mechanism for protein–ligand docking

  CEPGA LGA GA SODOCK ABC
PDB Ligand (torsions) Energy RMSD Energy RMSD Energy RMSD Energy RMSD Energy RMSD
3ptb ben (0) −11.72 1.90 −11.46 1.92 −10.31 1.66 −11.57 2.00 −10.90 1.97
1aha ade (1) −15.32 0.89 −16.10 0.45 −15.16 1.28 −14.95 1.44 −13.90 1.80
3hvt nvp (2) −17.90 0.30 −17.22 0.33 −15.73 0.43 −16.78 0.58 −15.60 0.55
1phg hem (3) −9.32 0.64 −8.56 0.80 −7.46 1.20 −8.95 1.54 −7.95 1.67
2mcp pc (4) −9.10 1.20 −8.22 1.33 −7.76 1.46 −7.72 1.42 −7.80 1.54
1stp btn (5) −13.57 0.90 −13.37 1.65 −11.03 1.84 −13.52 1.00 −13.17 1.68
6rnt ca (6) −9.32 0.58 −9.13 0.70 −8.58 0.69 −9.12 1.95 −8.90 1.55
4dfr mtx (7) −12.12 1.90 −11.44 1.23 −10.01 0.95 −11.34 1.60 −10.21 1.97
1ett 4qq (8) −14.21 1.29 −13.89 1.38 −11.42 1.62 −12.06 1.56 −12.70 1.70
1hri s57 (9) −10.89 1.38 −10.21 1.87 −9.67 1.80 −10.31 1.68 −10.13 1.67
1hvr xk2 (10) −31.06 0.64 −30.85 0.62 −21.95 1.68 −29.29 0.68 −28.64 0.85
4hmg sia (11) −10.32 1.89 −10.09 1.70 −8.44 1.69 −10.08 1.36 −9.80 1.54
1cdg mol (12) −8.70 1.45 −8.22 1.94 −7.32 1.69 −8.45 1.80 −7.13 1.12
1htf g26 (13) −21.48 1.27 −20.69 1.33 −18.86 1.46 −21.79 1.42 −19.17 1.96
1glq gtb (14) −9.46 1.38 −9.27 1.87 −7.97 1.87 −8.83 1.90 −9.13 1.60
1tmn nas (15) −10.29 0.85 −10.11 1.20 −9.68 1.11 −10.62 1.95 −9.37 0.60