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Table 2 Probes used in FISH analysis of the culture

From: Role of nitrite in the competition between denitrification and DNRA in a chemostat enrichment culture

Probe

Sequence (5′→3′)

Dye

Specificity

Reference

EUB338mix

GCWGCCWCCCGTAGGWGT

Cy5

Most bacteria

Amann et al. (1990) and Daims et al. (1999)

Beta42a

GCCTTCCCACTTCGTTT

Fluos

Betaproteobacteria

Manz et al. (1992)

Gamma42a

GCCTTCCCACATCGTTT

None

Gammaproteobacteria

Manz et al. (1992)

GeoBac464

AGCCTCTCTACACTTCGTC

Cy3

Specific for DNRA bacterium

van den Berg et al. (2015)