Table 4 Descriptive statistics from binning the unassembled reads generated from the enrichment culture UC10 derived from the soil-compost mixture
From: Microbial communities in pyrene amended soil–compost mixture and fertilized soil
Binning results | ||||
|---|---|---|---|---|
Bin identifier | Classified reads (total = 180,155,076) | Abundance estimate | Fraction of binned reads mapped on reconstructed genomes (%) | Breakdown of column 4 into distinct reconstructed genomes |
bin_1 | 168,591,494 | 1.389 | 82 | 82% Bordetella |
bin_2 | 9,445,028 | 51 | 97 | 97% Mycobacterium |
bin_3 | 1,870,808 | 19 | 98 | 72% Stenotrophomonas; 22% Sphingopyxis; 3% Mycobacterium |
bin_4 | 1,331,276 | 11 | 98 | 76% Sphingopyxis; 19% Stenotrophomonas; 3% Bordetella |
bin_5 | 247,746 | 1 | 47 | 42% Bordetella; 1% Sphingopyxis; 4% Mycobacterium |
Fraction of total unassembled reads of the enrichment culture mapped to | ||||
Bordetella | 76.52% | |||
Mycobacterium | 5.12% | |||
Stenotrophomonas | 1.04% | |||
Sphingopyxis | 0.83% | |||