Skip to main content

Table 3 Expression counts of selected transcripts

From: Deep RNA-Seq profile reveals biodiversity, plant–microbe interactions and a large family of NBS-LRR resistance genes in walnut (Juglans regia) tissues

Transcript CE CI CK EM FL HC HL HP HU IF LE LM LY PK PL PT RT SE TZ VB
a
 C30378 _G1_I1                  104    
 C7548 _G1_I1                  497   2  
 C26754 _G1_I1                  28    
 C43181 _G1_I1                  326    
 C49955_G2_I1 1 2 1 1    3 2    1 2 1   4   185    
 C62634 _G1_I1                  123    
 C442 G2 I1                     24
 C03 _G1_I1          2            8
 C28542 _G1_I1    18      2             14
b
 C9244 _G1_I1                     8
 C87 _G1_I1          2         3    
 C61284 _G1_I1    12                  14
 C498 _G1_I1    2                  12
 C6553 _G1_I1                     8
 C35196 _G1_I1    2    2   14 2            10
 C50331 G1 I4    2    1 2 11 1    2         37
 C34393 _G1_I1 4 1 4 1 16 3 9 4 2   2 45 12 68 4 2 21 1 2 15
c
 C50331_G1_I5    2      13 14    8 2       2 26
 C58663 _G1_I1    2      2             10
 C29801 _G1_I1         4     2         16
 C30295 _G1_I1         8             29
 C16207 _G1_I1                     54
 C50331 G1 I2    2    1   4 3    2        2 14
  1. These are raw counts, and are not normalized
  2. a Phytophthora is the pathogen responsible for potato blight, which caused the Great Irish Famine (1845–1849). C30378_G1_I1 encodes a glyceraldehyde 3-phosphate dehydrogenase, an enzyme involved in glycolysis. Most transcripts from this oomycete are found localized in the root (Fig. 2a). b Cryptococcus is the causal agent of cryptococcosis, affecting immuno-compromised individuals. These fungi are mostly localized in the catkins and the vegetative buds. It was previously shown that the plant surface provides a conducive environment for the sexual cycle of these pathogens. c Pyrenophora: These fungi, responsible for the `tan spot’ disease in barley, are spread out throughout different tissues. d Acyrthosiphon: The pea aphid pest. C58762_G1_I1 encodes a 91 long ORF that has a 99 % identity match to the ribosomal protein L37 (Accession: NP 001129424.1). The low counts of this transcript are testimony to the ability of the RNAseq technology to accurately determine the sequence and localization of transcripts