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AMB Express

Table 3 Expression counts of selected transcripts

From: Deep RNA-Seq profile reveals biodiversity, plant–microbe interactions and a large family of NBS-LRR resistance genes in walnut (Juglans regia) tissues

Transcript

CE

CI

CK

EM

FL

HC

HL

HP

HU

IF

LE

LM

LY

PK

PL

PT

RT

SE

TZ

VB

a

 C30378 _G1_I1

                

104

   

 C7548 _G1_I1

                

497

 

2

 

 C26754 _G1_I1

                

28

   

 C43181 _G1_I1

                

326

   

 C49955_G2_I1

1

2

1

1

  

3

2

  

1

2

1

 

4

 

185

   

 C62634 _G1_I1

                

123

   

 C442 G2 I1

                   

24

 C03 _G1_I1

        

2

          

8

 C28542 _G1_I1

  

18

    

2

           

14

b

 C9244 _G1_I1

                   

8

 C87 _G1_I1

        

2

       

3

   

 C61284 _G1_I1

  

12

                

14

 C498 _G1_I1

  

2

                

12

 C6553 _G1_I1

                   

8

 C35196 _G1_I1

  

2

  

2

 

14

2

          

10

 C50331 G1 I4

  

2

  

1

2

11

1

  

2

       

37

 C34393 _G1_I1

4

1

4

1

16

3

9

4

2

 

2

45

12

68

4

2

21

1

2

15

c

 C50331_G1_I5

  

2

    

13

14

  

8

2

     

2

26

 C58663 _G1_I1

  

2

    

2

           

10

 C29801 _G1_I1

       

4

   

2

       

16

 C30295 _G1_I1

       

8

           

29

 C16207 _G1_I1

                   

54

 C50331 G1 I2

  

2

  

1

 

4

3

  

2

      

2

14

  1. These are raw counts, and are not normalized
  2. a Phytophthora is the pathogen responsible for potato blight, which caused the Great Irish Famine (1845–1849). C30378_G1_I1 encodes a glyceraldehyde 3-phosphate dehydrogenase, an enzyme involved in glycolysis. Most transcripts from this oomycete are found localized in the root (Fig. 2a). b Cryptococcus is the causal agent of cryptococcosis, affecting immuno-compromised individuals. These fungi are mostly localized in the catkins and the vegetative buds. It was previously shown that the plant surface provides a conducive environment for the sexual cycle of these pathogens. c Pyrenophora: These fungi, responsible for the `tan spot’ disease in barley, are spread out throughout different tissues. d Acyrthosiphon: The pea aphid pest. C58762_G1_I1 encodes a 91 long ORF that has a 99 % identity match to the ribosomal protein L37 (Accession: NP 001129424.1). The low counts of this transcript are testimony to the ability of the RNAseq technology to accurately determine the sequence and localization of transcripts
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