Strain
|
BIRD1
|
DOT-T1E
|
F1
|
GB-1
|
KT2440
|
LS46
|
ND6
|
S16
|
UW4
|
W619
|
---|
Isolated in
|
Spain
|
Spain
|
USA
|
USA
|
Japan
|
Canada
|
China
|
China
|
Canada
|
USA
|
Genome size
|
5731541
|
6260702
|
5959964
|
6078430
|
6181863
|
5862556
|
6304310
|
5984790
|
6183388
|
5774330
|
% G + C
|
61.74
|
61.43
|
61.86
|
61.94
|
61.52
|
61.69
|
61.62
|
62.32
|
60.05%
|
61.44
|
Gene count
|
5046
|
5802
|
5423
|
5515
|
5481
|
5316
|
6484
|
5307
|
5517
|
5292
|
Homologous genes (%)a
|
92.62
|
91.39
|
93.75
|
90.17
|
91.32
|
100
|
85.57
|
89.97
|
82.02
|
89.14
|
% Homologyb
|
95.89
|
97.67
|
97.52
|
90.86
|
95.94
|
100
|
97.51
|
91.41
|
86.59
|
87.06
|
CDS count
|
4960
|
5721
|
5300
|
5417
|
5350
|
5219
|
6391
|
5218
|
5423
|
5194
|
CDS %
|
98.30
|
98.60
|
97.73
|
98.22
|
97.61
|
98.17
|
98.57
|
98.32
|
98.30
|
98.15
|
16S rRNA
|
7
|
0
|
6
|
7
|
7
|
7
|
6
|
6
|
7
|
7
|
tRNA
|
64
|
58
|
76
|
74
|
74
|
76
|
74
|
70
|
72
|
75
|
COG count
|
4139
|
4509
|
4171
|
4267
|
4199
|
4260
|
4519
|
4313
|
4541
|
4089
|
% COG
|
82.02
|
77.71
|
76.91
|
77.37
|
76.61
|
78.61
|
69.69
|
81.27
|
82.31
|
77.27
|
Protein W FPc
|
75.23
|
71.35
|
73.45
|
74.75
|
66.30
|
79.50
|
64.24
|
76.37
|
75.37
|
74.79
|
Protein w/o FP d
|
23.07
|
27.25
|
24.29
|
23.37
|
31.31
|
17.29
|
34.33
|
21.95
|
22.93
|
23.26
|
Reference
|
Matilla et al. [2011]
|
Udaondo et al. [2012]
|
Wu et al. [2011]
|
Wu et al. [2011]
|
Nelson et al. [2002]
|
Sharma et al. [2013]
|
Li et al. [2012]
|
Yu et al. [2011]
|
Duan t et al. [2013]
|
Wu et al. [2011]
|
- a 80% minimal nucleotide sequence identity; e-value 1 e−5.
- bBLASTn of whole genome.
- c Proteins with function prediction (%).
- d Proteins w/o predicted function (%).