Genome features of Pseudomonas putida LS46, a novel polyhydroxyalkanoate producer and its comparison with other P. putida strains

AMB Express

Table 1 General features of the genomes of P. putida strains

Strain	BIRD1	DOT-T1E	F1	GB-1	KT2440	LS46	ND6	S16	UW4	W619
Isolated in	Spain	Spain	USA	USA	Japan	Canada	China	China	Canada	USA
Genome size	5731541	6260702	5959964	6078430	6181863	5862556	6304310	5984790	6183388	5774330
% G + C	61.74	61.43	61.86	61.94	61.52	61.69	61.62	62.32	60.05%	61.44
Gene count	5046	5802	5423	5515	5481	5316	6484	5307	5517	5292
Homologous genes (%)^a	92.62	91.39	93.75	90.17	91.32	100	85.57	89.97	82.02	89.14
% Homology^b	95.89	97.67	97.52	90.86	95.94	100	97.51	91.41	86.59	87.06
CDS count	4960	5721	5300	5417	5350	5219	6391	5218	5423	5194
CDS %	98.30	98.60	97.73	98.22	97.61	98.17	98.57	98.32	98.30	98.15
16S rRNA	7	0	6	7	7	7	6	6	7	7
tRNA	64	58	76	74	74	76	74	70	72	75
COG count	4139	4509	4171	4267	4199	4260	4519	4313	4541	4089
% COG	82.02	77.71	76.91	77.37	76.61	78.61	69.69	81.27	82.31	77.27
Protein W FP^c	75.23	71.35	73.45	74.75	66.30	79.50	64.24	76.37	75.37	74.79
Protein w/o FP ^d	23.07	27.25	24.29	23.37	31.31	17.29	34.33	21.95	22.93	23.26
Reference	Matilla et al. [2011]	Udaondo et al. [2012]	Wu et al. [2011]	Wu et al. [2011]	Nelson et al. [2002]	Sharma et al. [2013]	Li et al. [2012]	Yu et al. [2011]	Duan t et al. [2013]	Wu et al. [2011]