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Table 1 General features of the genomes of P. putida strains

From: Genome features of Pseudomonas putida LS46, a novel polyhydroxyalkanoate producer and its comparison with other P. putida strains

Strain BIRD1 DOT-T1E F1 GB-1 KT2440 LS46 ND6 S16 UW4 W619
Isolated in Spain Spain USA USA Japan Canada China China Canada USA
Genome size 5731541 6260702 5959964 6078430 6181863 5862556 6304310 5984790 6183388 5774330
% G + C 61.74 61.43 61.86 61.94 61.52 61.69 61.62 62.32 60.05% 61.44
Gene count 5046 5802 5423 5515 5481 5316 6484 5307 5517 5292
Homologous genes (%)a 92.62 91.39 93.75 90.17 91.32 100 85.57 89.97 82.02 89.14
% Homologyb 95.89 97.67 97.52 90.86 95.94 100 97.51 91.41 86.59 87.06
CDS count 4960 5721 5300 5417 5350 5219 6391 5218 5423 5194
CDS % 98.30 98.60 97.73 98.22 97.61 98.17 98.57 98.32 98.30 98.15
16S rRNA 7 0 6 7 7 7 6 6 7 7
tRNA 64 58 76 74 74 76 74 70 72 75
COG count 4139 4509 4171 4267 4199 4260 4519 4313 4541 4089
% COG 82.02 77.71 76.91 77.37 76.61 78.61 69.69 81.27 82.31 77.27
Protein W FPc 75.23 71.35 73.45 74.75 66.30 79.50 64.24 76.37 75.37 74.79
Protein w/o FP d 23.07 27.25 24.29 23.37 31.31 17.29 34.33 21.95 22.93 23.26
Reference Matilla et al. [2011] Udaondo et al. [2012] Wu et al. [2011] Wu et al. [2011] Nelson et al. [2002] Sharma et al. [2013] Li et al. [2012] Yu et al. [2011] Duan t et al. [2013] Wu et al. [2011]
  1. a 80% minimal nucleotide sequence identity; e-value 1 e−5.
  2. bBLASTn of whole genome.
  3. c Proteins with function prediction (%).
  4. d Proteins w/o predicted function (%).