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Table 1 Summary of metagenomic data obtained from the mangrove microbiomes

From: A potential source for cellulolytic enzyme discovery and environmental aspects revealed through metagenomics of Brazilian mangroves

Parameters Rio Bahia
MG-RAST ID 44852183 44852193
No. of sequences 494,201 503,019
Avg. length (bp) 327 ± 110* 328 ± 111*
Total length (bp) 161,854,245 165,387,021
Predicted proteins 488,630 450,087
Assigned reads 242,868 261,482
LCA ¥
Bacteria (%) 206,733 (94,3) 273,078 (97,36)
Archaea (%) 10,041 (4,6) 4,623 (1,65)
Eukarya (%) 1,559 (0,7) 1,018 (0,36)
Viruses (%) 297 (0,1) 29 (0,01)
Unclassified (%) 649 (0,3) 1,740 (0,62)
MEGAN
No. of sequences 494,201 503,019
Assigned reads 293,374 340,668
Bacteria (%) 252,395 (93,6) 313,633 (97,3)
Archaea (%) 13,173 (4,88) 5,686 (1,76)
Eukarya (%) 3,295 (1,22) 2,805 (0,87)
Viruses (%) 554 (0,2) 57 (0,01)
Unclassified (%) 269 (0,1) 182 (0,06)
  1. * After duplicate removal, splitting and trimming of sequence reads.
  2. Predicted protein coding regions assigned an annotation using at least one of protein databases (M5NR) in MG-RAST server.
  3. ¥Lowest common ancestor (LCA) using 1e-5 cutoff, 60% minimum identity, and a minimum alignment lenght cutoff of 15.