|
Parameters
|
Rio
|
Bahia
|
|---|
|
MG-RAST ID
|
44852183
|
44852193
|
|
No. of sequences
|
494,201
|
503,019
|
|
Avg. length (bp)
|
327 ± 110*
|
328 ± 111*
|
|
Total length (bp)
|
161,854,245
|
165,387,021
|
|
Predicted proteins
†
|
488,630
|
450,087
|
|
Assigned reads
|
242,868
|
261,482
|
|
LCA
¥
|
|
Bacteria (%)
|
206,733 (94,3)
|
273,078 (97,36)
|
|
Archaea (%)
|
10,041 (4,6)
|
4,623 (1,65)
|
|
Eukarya (%)
|
1,559 (0,7)
|
1,018 (0,36)
|
|
Viruses (%)
|
297 (0,1)
|
29 (0,01)
|
|
Unclassified (%)
|
649 (0,3)
|
1,740 (0,62)
|
|
MEGAN
|
|
No. of sequences
|
494,201
|
503,019
|
|
Assigned reads
|
293,374
|
340,668
|
|
Bacteria (%)
|
252,395 (93,6)
|
313,633 (97,3)
|
|
Archaea (%)
|
13,173 (4,88)
|
5,686 (1,76)
|
|
Eukarya (%)
|
3,295 (1,22)
|
2,805 (0,87)
|
|
Viruses (%)
|
554 (0,2)
|
57 (0,01)
|
|
Unclassified (%)
|
269 (0,1)
|
182 (0,06)
|
-
* After duplicate removal, splitting and trimming of sequence reads.
-
†Predicted protein coding regions assigned an annotation using at least one of protein databases (M5NR) in MG-RAST server.
-
¥Lowest common ancestor (LCA) using 1e-5 cutoff, 60% minimum identity, and a minimum alignment lenght cutoff of 15.
