Primers or probes
a, b
|
Sequence (5
′ ➞3
′)
|
Product size (bp)
|
Source
|
---|
S. oralis
| | | |
gtfR F
|
ACCAGCAGATACGAAAGAAGCAT
|
235
|
This study
|
gtfR R
|
AGGTTCGGGCAAGCGATCTTTCT
| | |
TaqMan probe
|
AAGGCTGCTGTTGCTGAAGAAGT
| | |
S. gordonii
| | | |
gtfG F
|
CGGATGATGCTAATCAAGTGACC
|
177
|
This study
|
gtfG R
|
GTTAGCTGTTGGATTGGTTGCC
| | |
TaqMan probe
|
AGAACAGTCCGCTGTTCAGAGCAA
| | |
V. parvula
| | | |
16S rRNA F
|
GGATAGATGAAAGGTGGCCTCT
|
72
|
This study
|
16S rRNA R
|
CCAACTAGCTAATCAGACGCAAT
| | |
LNA probe*
|
FAM-GAAGGAGG
| | |
F. nucleatum
| | | |
fadA F
|
TGCAGCAAGTTTAGTAGGTG
|
146
|
This study
|
fadA R
|
CATTGTAAACTTGTTCATTTTGT
| | |
TaqMan probe
|
AGCACTAGATGCTGAATACCAA
| | |
P. intermedia
| | | |
16S rRNA F
|
CGGTCTGTTAAGCGTGTTGTG
|
100
|
Loozen et al.
|
16S rRNA R
|
CACCATGAATTCCGCATACG
| | |
TaqMan probe
|
TGGCGGACTTGAGTGCACGC
| | |
- a) F, Forward primer; R, Reverse primer.
- b) All TaqMan probes correspond to: 5′ FAM, 3′ TAMRA.
- * LNA probe, Roche Diagnostics.