Table 2 Assembly, prediction, and annotation statistics for the I. obliquus genome
From: Lignin-degrading enzymes from a pathogenic canker-rot fungus Inonotus obliquus strain IO-B2
Characteristic | Statistic |
|---|---|
Number of genome contigs | 15,755 |
N50 length (bp) | 9032 |
Shortest contig length (bp) | 200 |
Longest contig length (bp) | 199,051 |
Average contig length (bp) | 2694.8 |
Total number of nucleotides in genomic contig (bp) | 42,456,479 |
GC content (%) | 47.6 |
rRNA genes | 2 |
tRNA genes | 136 |
Number of protein coding genes | 21,203 |
Number of genes annotated by nt database | 8280 |
Number of genes annotated by Swiss-prot database | 4188 |
Number of genes annotated by Pfam | 16,190 |
Number of genes annotated by GO | 11,450 |
Number of genes annotated by KEGG | 5277 |
Number of genes annotated by PHI-base | 1621 |