Table 5 Ranking of the candidate reference genes calculated using RefFinder under different conditions
Ranking ordera | All conditions | Different media | Different light conditions | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Rice medium | PD medium | Czapek–Dox medium | All-dark | All-light | 12-h light/dark | |||||||||
Gene | Rb | Gene | R | Gene | R | Gene | R | Gene | R | Gene | R | Gene | R | |
1 | SbLAlv9 | 1.68 | SbLAlv9 | 1.32 | SbJsn1 | 1.68 | SbJsn1 | 1.41 | SbVAC55 | 1.86 | SbJsn1 | 1.68 | SbLAlv9 | 1.57 |
2 | SbJsn1 | 2.3 | SbSAS1 | 1.41 | SbtS | 2.71 | VAC | 2.21 | SbLAlv9 | 1.86 | SbtS | 2.91 | SbSAS1 | 2.45 |
3 | SbSAS1 | 2.91 | SbJsn1 | 3.41 | SbSAS1 | 2.83 | SbSAS1 | 4.05 | VAC | 3.22 | SbSAS1 | 2.99 | SbJsn1 | 2.82 |
4 | SbVAC55 | 3.98 | SbVAC55 | 3.87 | SbLAlv9 | 3.25 | UBI | 4.12 | SbJsn1 | 3.94 | SbLAlv9 | 4.16 | UBI | 3.44 |
5 | SbtS | 4.47 | TFC | 4.47 | SbVAC55 | 5 | SbLAlv9 | 4.53 | SbSAS1 | 5.12 | SbCHP | 4.28 | SbtS | 5.18 |
6 | SbCHP | 5.36 | SbCHP | 6.34 | SbTRX | 5.05 | SbCHP | 5.76 | SbCHP | 5.32 | SbVAC55 | 4.9 | SbTRX | 6.32 |
7 | SbTRX | 6.26 | VAC | 7.17 | TFC | 6.04 | SbTRX | 6.34 | SbTRX | 5.38 | UBI | 6.19 | VAC | 6.45 |
8 | UBI | 6.84 | SbtS | 7.44 | UBI | 6.74 | TFC | 7.38 | SbPKI | 6.84 | VAC | 7.5 | SbVAC55 | 7.27 |
9 | VAC | 7.91 | SbTRX | 8.21 | SbCHP | 8.46 | SbFYVE | 7.44 | SbtS | 7.11 | SbTRX | 7.64 | TFC | 7.35 |
10 | TFC | 8.8 | SbFYVE | 10.47 | SbFYVE | 9 | SbPKI | 7.65 | TFC | 10.47 | SbFYVE | 8.57 | SbCHP | 7.61 |
11 | SbPKI | 11.17 | UBI | 10.74 | VAC | 10.47 | SbVAC55 | 10.36 | UBI | 11 | TFC | 9.64 | SbFYVE | 10.74 |
12 | SbFYVE | 11.24 | SbPKI | 11.74 | SbPKI | 11.74 | SbtS | 10.69 | SbFYVE | 11.17 | SbPKI | 10.74 | SbPKI | 11.74 |