Genome features of Pseudomonas putida LS46, a novel polyhydroxyalkanoate producer and its comparison with other P. putida strains

Sharma, Parveen K; Fu, Jilagamazhi; Zhang, Xiangli; Fristensky, Brian; Sparling, Richard; Levin, David B

doi:10.1186/s13568-014-0037-8

AMB Express

Table 3 Homology of proteins associated with polyhydroxyalkanoate production

From: Genome features of Pseudomonas putida LS46, a novel polyhydroxyalkanoate producer and its comparison with other P. putida strains

Name	Locus tag	Enzyme	Product size (aa)	*P.putida*strains
Name	Locus tag	Enzyme	Product size (aa)	BIRD1	DOT	F1	GB1	KT2440	ND6	S16	W619
FadD	07414	Acyl-CoA synthetase	565	99	100	99	94	99	99	94	87
FadA	04404	3-ketoacyl-CoA thiolase	392	99	100	100	99	99	100	99	100
FadAx	07424	Acetyl-CoA acetyltransferases	380	99	99	99	98	99	99	98	96
FadB	00695	3-hydroxyacyl-CoA dehydrogenase/epimerase	715	98	93	99	94	94	99	93	95
FadB2	07419	3-hydroxyacyl-CoA dehydrogenase	255	99	100	100	97	100	99	94	96
FadD2	21046	Acyl-CoA synthetase	562	99	99	99	98	99	99	96	93
FadE	00145	Acyl CoA dehydrogenase	601	98	93	99	94	94	99	93	95
FadE2	05901	Acyl CoA dehydrogenase	592	95	99	99	95	98	99	95	94
PhaC1	05621	Poly(R)-hydroxyalkanoic acid synthase	560	99	99	98	99	99	99	98	94
PhaZ	05616	Poly(3-hydroxyalkanoate) depolymerase	283	99	100	100	99	99	99	97	95
PhaC2	05611	Poly(R)-hydroxyalkanoic acid synthase	559	99	99	99	96	99	100	99	95
PhaD	05606	Transcriptional regulator	204	100	99	96	99	99	99	97	95
PhaF	05601	PHA granule associated protein	253	99	100	100	97	99	100	98	94
PhaI	05596	PHA granule associated protein	139	99	100	96	93	96	96	91	91
PhaG	13888	Hydroxyacyl-ACP:CoA transacylase	295	99	99	99	98	99	100	94	89
FabD	00250	malonyl CoA-acyl carrier protein transacylase	312	99	99	100	96	99	100	98	92
FabA	12710	3 hydroxyacyl(decanyl)-ACP dehydratase	171	100	100	100	99	100	100	98	92
FabB	12715	2 -Oxoacyl carrier protein synthase	406	100	99	99	99	99	99	99	99
FabG	23353	3-ketoacyl-(acyl-carrier-protein) reductase	450	99	99	99	96	99	99	95	90
FabG_2	00255	3-oxoacyl-(acyl-carrier-protein) reductase	450	99	100	99	99	100	99	100	99
FabG_3	15924	3-oxoacyl-(acyl-carrier-protein) reductase	450	100	100	100	97	99	99	94	91
FabZ	14589	3-hydroxyacyl-[acyl carrier protein] dehydratase	146	100	100	100	100	100	100	99	95

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