From: Comparative evaluation of rumen metagenome community using qPCR and MG-RAST
Sample | Fibrobacter succinogens(% ± SD) | |||
---|---|---|---|---|
qPCR | Shotgun | Amplicon | ||
50% roughage | GL | 0.33 ± 0.005 | 0.90 ± 0.001 | 0.33 ± 0.002 |
DL | 0.35 ± 0.001 | 0.70 ± 0.000 | 0.70 ± 0.004 | |
GS | 0.20 ± 0.001 | 0.43 ± 0.0005 | 0.35 ± 0.001 | |
DS | 0.11 ± 0.0007 | 0.38 ± 0.0005 | 0.37 ± 0.001 | |
75% roughage | GL | 0.40 ± 0.003 | 1.23 ± 0.005 | 3.00 ± 0.000 |
DL | 0.38 ± 0.003 | 1.63 ± 0.011 | 1.75 ± 0.009 | |
GS | 0.10 ± 0.0004 | 0.50 ± 0.0008 | 0.70 ± 0.000 | |
DS | 0.02 ± 0.000 | 0.40 ± 0.0008 | 0.28 ± 0.002 | |
100% roughage | GL | 0.20 ± 0.002 | 0.53 ± 0.001 | 0.55 ± 0.311 |
DL | 0.78 ± 0.003 | 2.00 ± 0.000 | 3.00 ± 0.000 | |
GS | 0.06 ± 0.0005 | 0.38 ± 0.002 | 0.18 ± 0.112 | |
DS | 0.01 ± 0.000 | 0.28 ± 0.0005 | 0.09 ± 0.020 |