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Table 5 Molecular docking results for two insecticidal compounds (4-nitrophenol and diazinon) as key constituents of the metabolic extract from Streptomyces sp. ES2 EMCC2291 insides AchE, LDH, and Protease proteins

From: Endophytic actinobacteria from wild medicinal plants are a natural source of insecticide to control the African cotton leafworm (Spodoptera littoralis)

 

4-nitro phenol

Diazinon

Binding energy (Kcal/mol)

Ligand-recptor Interactions

Binding energy (Kcal/mol)

Ligand-recptor Interactions

Acetylcholinesterase (AchE)

− 2.3

1 H-bond with Tyr 133 Vanderwaal forces with Trp 86

− 3.4

3 H-Bonds with Tyr 124, Tyr 337, and Ser 125 Vanderwaal forces with Trp 86

Lactate dehydrogenase (LDH)

− 12.3

1 H-bond with Asp 53

− 15.6

1 H-bond with Gly 99

Protease

− 16.4

1 H-bond with Arg 740

− 16.7

4 H-bonds with Ser 685, Lys 784, Arg 740

  1. Bold amino acids are the key interactive ones with which that native ligands interact. Binding energy of ligand-protein complex is expressed as Kcal/mol
  2. Gly 99, dipeptide Glycyl-glycine metabolism; Arg 740, Arginine amino acid metabolism; Asp 53, aspartic acid metabolism; Trp 86, Tryptophan amino acid metabolism