Draft genome of Raoultella planticola, a high lead resistance bacterium from industrial wastewater

Elarabi, Nagwa I.; Halema, Asmaa A.; Abdelhadi, Abdelhadi A.; Henawy, Ahmed R.; Samir, Omar; Abdelhaleem, Heba A. R.

doi:10.1186/s13568-023-01519-w

AMB Express

Table 3 Genes/gene clusters of heavy metal resistance in R. planticola FACU 3

From: Draft genome of Raoultella planticola, a high lead resistance bacterium from industrial wastewater

Genes	Function	length	Heavy metal resistance	Locus tag
zntA^b	Zinc/cadmium/lead-transporting P-type ATPase	2199	Zn, Cd, Pb	NM584_04589
chrR^c	Quinone reductase	567	Cr	NM584_03451
arsA	Arsenical pump-driving ATPase	1752	As	NM584_05684
arsB^c	Arsenical pump membrane protein^a	1293 1290 1167	As	NM584_01807 NM584_05685 NM584_05812
arsC^c	Arsenate reductase^a	426 426 429	As	NM584_01808 NM584_05686 NM584_05813
arsH^c	NADPH-dependent FMN reductase^a	699 723	As	NM584_01805 NM584_05814
arsD^c	Arsenical resistance operon trans-acting repressor	363	As	NM584_05683
arsR^c	Arsenic resistance transcriptional regulator	354	As	NM584_05653
rcnR^b	Transcriptional repressor RcnR	272	Ni, Co	NM584_00068
rcnB^b	Nickel/cobalt homeostasis protein RcnB	318	Ni, Co	NM584_02529
hoxN^b	High-affinity nickel transport protein	1014	Ni	NM584_01839
cnrA^b	Nickel and cobalt resistance protein	3183	Ni, Co	NM584_00460
nikA^c	Nickel-binding periplasmic protein^a	1569 1623	Ni	NM584_03175 NM584_04730
nikB^c	Nickel transport system permease protein	945	Ni	NM584_03176
nikC^c	Nickel transport system permease protein	834	Ni	NM584_03177
nikD^c	Nickel import ATP-binding protein	765	Ni	NM584_03178
nikE^c	Nickel import ATP-binding protein	792	Ni	NM584_03179
nikR^c	Nickel-responsive regulator	417	Ni	NM584_03180
zitB^b	Zinc transporter ZitB	939	Zn	NM584_00719
zntB^b	Zinc transport protein ZntB^a	1029 934	Zn	NM584_02816 NM584_04340
zntR^b	HTH-type transcriptional regulator	426	Zn	NM584_05551
znuA^b	High-affinity zinc uptake system protein ZnuA	945	Zn	NM584_01443
znuC^b	Zinc import ATP-binding protein ZnuC	753	Zn	NM584_01442
znuB^b	High-affinity zinc uptake system membrane protein ZnuB	786	Zn	NM584_01441
yeiR^b	Zinc-binding GTPase YeiR	978	Zn	NM584_02585
zur^b	Zinc uptake regulation protein	516	Zn	NM584_05063
ftsH^b	ATP-dependent zinc metalloprotease FtsH	1944	Zn	NM584_04403
zupT^b	Zinc transporter ZupT	771	Zn	NM584_02221
copA^b	Copper-exporting P-type ATPase Copper resistance protein A	2502 1818	Cu Cu	NM584_01046 NM584_05521
copB^b	Copper resistance protein B	897	Cu	NM584_05520
pcoC	Copper resistance protein C	381	Cu	NM584_05519
copD^b	Copper resistance protein D	930	Cu	NM584_05518
copR^b	Transcriptional activator protein^a	681 702	Cu	NM584_05517 NM584_01018
sasA^b	Adaptive-response sensory-kinase	1401	Cu	NM584_05516
pcoE^b	putative copper-binding protein PcoE	435	Cu	NM584_05515
cutC^b	Copper homeostasis protein CutC	744	Cu	NM584_01429
cueO^b	Blue copper oxidase	1626	Cu	NM584_03744
cueR^b	HTH-type transcriptional regulator CueR	411	Cu	NM584_01041
cusA^b	Cation efflux system protein CusA^a	3156 3146	Cu, Ag	NM584_03841 NM584_05527
cusB^b	Cation efflux system protein CusB^a	1278 1293	Cu, Ag	NM584_03840 NM584_05528
cusF^b	Cation efflux system protein CusF^a	348 354	Cu, Ag	NM584_03839 NM584_05529
cusC^b	Cation efflux system protein CusC^a	1482 1494 1386	Cu, Ag	NM584_02048 NM584_03838 NM584_05530
cusR^b	Cation efflux system protein CusR^a	684 681	Cu, Ag	NM584_03837 NM584_05531
cusS^b	Sensor histidine kinase CusS^a	1452 1467	Cu, Ag	NM584_03836 NM584_05532
silE^b	Silver-binding protein^a	450 432	Ag	NM584_05522 NM584_05533
silP^b	Silver exporting P-type ATPase	2442	Ag	NM584_05525
merR^b	Transcriptional regulator^a	399 456	Hg	NM584_00139 NM584_02915

Numbers depict relevant contigs, Locus tags are from Prokka annotation
^aSome genes exist in multiple copies and locations, ^bGenes located on chromosome, ^cGenes located on plasmid

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