Table 2 Genes involved in plant growth-promoting traits based on BlastKOALA and RastSEED

IAA

trpD

Anthranilate phosphoribosyltransferase

[EC:2.4.2.18]

trpC

Indole-3-glycerol phosphate synthase

[EC:4.1.1.48]

trpA

Tryptophan synthase alpha chain

[EC:4.2.1.20]

trpB

Tryptophan synthase beta chain

[EC:4.2.1.20]

trpF

Phosphoribosylanthranilate isomerase

[EC:5.3.1.24]

trpEG

Anthranilate synthase

[EC:4.1.3.27]

ipdC

Indolepyruvate decarboxylase

[EC:4.1.1.74]

WARS, trpS

Tryptophanyl-tRNA synthetase

[EC:6.1.1.2]

mtrB

Transcription attenuation protein (tryptophan RNA-binding attenuator protein)

ipdC

Indolepyruvate decarboxylase

[EC:4.1.1.74]

amiE

Amidase

[EC:3.5.1.4]

patB, malY

Cysteine-S-conjugate beta-lyase

[EC:4.4.1.13]

ND

Putative tryptophan/tyrosine transport system substrate-binding protein

ND

Putative tryptophan/tyrosine transport system permease protein

ND

Putative tryptophan/tyrosine transport system ATP-binding protein

Iron-siderophore transport

sirC, fecD, cbrC

Iron-siderophore transport system permease protein

sirB, fecC, cbrB

Iron-siderophore transport system permease protein

sirA, fecB, cbrA

Iron-siderophore transport system substrate-binding protein

feoB

Ferrous iron transport protein B

ND

Iron complex transport system substrate-binding protein

fagD, cchF, irp1A, piaA

Iron-siderophore transport system substrate-binding protein

fepD, fagA, cchC, desH

Iron-siderophore transport system permease protein

efeO

Iron uptake system component EfeO

fepG, fagB, cchD, desG

Iron-siderophore transport system permease protein

fepC, fagC, cchE, desF

Iron-siderophore transport system ATP-binding protein

[EC:7.2.2.17 7.2.2.-]

fhuB, ftsC, siuB

Ferric hydroxamate/heme transport system permease protein

fhuD, ftsB, siuD

Ferric hydroxamate/heme transport system substrate-binding protein

fhuA, ftsA, siuA

Ferric hydroxamate/heme transport system ATP-binding protein

[EC:7.2.2.16]

Iron(III) transport

afuB, fbpB

Iron(III) transport system permease protein

afuC, fbpC

Iron(III) transport system ATP-binding protein

[EC:7.2.2.7]

afuA, fbpA

Iron(III) transport system substrate-binding protein

afuC, fbpC

Iron(III) transport system ATP-binding protein

[EC:7.2.2.7]

afuA, fbpA

Iron(III) transport system substrate-binding protein

afuB, fbpB

Iron(III) transport system permease protein

ND

Iron complex transport system ATP-binding protein

[EC:7.2.2.-]

Phosphate solubilization

phnD

Phosphonate transport system substrate-binding protein

phnC

Phosphonate transport system ATP-binding protein

[EC:7.3.2.2]

phnE

Phosphonate transport system permease protein

phnP

Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase

[EC:3.1.4.55]

phoA, phoB

Alkaline phosphatase

[EC:3.1.3.1]

phoH, phoL

Phosphate starvation-inducible protein PhoH and related proteins

phoH2

PhoH-like ATPase

phoU

Phosphate transport system protein

pstA

Phosphate transport system permease protein

pstB

Phosphate transport system ATP-binding protein

[EC:7.3.2.1]

pstC

Phosphate transport system permease protein

pstS

Phosphate transport system substrate-binding protein

ptsH

Phosphocarrier protein HPr

ugpA

Sn-glycerol 3-phosphate transport system permease protein

ugpB

Sn-glycerol 3-phosphate transport system substrate-binding protein

ugpE

Sn-glycerol 3-phosphate transport system permease protein

plsX

Phosphate acyltransferase

[EC:2.3.1.274]

ppk1

Polyphosphate kinase

[EC:2.7.4.1]

gapA

Glyceraldehyde 3-phosphate dehydrogenase

[EC:1.2.1.12]

hisC

Histidinol-phosphate aminotransferase

[EC:2.6.1.9]

TC.PIT

Inorganic phosphate transporter, PiT family

ugpE

Sn-glycerol 3-phosphate transport system permease protein