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Table 1 Candida TaqMan primer and probe sequences

From: Rapid preparation of Candida genomic DNA: combined use of enzymatic digestion and thermal disruption

Species

Sequences (5’to 3’)a

Targetb

Duplex 1

 Candida albicans

F: GGG TTT GCT TGA AAG ACG GTA

R: TTG AAG ATA TAC GTG GTG GAC GTT A

P: VIC-ACC TAA GCC ATT GTC AAA GCG ATC CCG-TAMRA

ITS2

 Universal Candida spp.

F:GGA TCT CTT GGT TCT CGC ATC

R:AAC GAC GCT CAA ACA GGC AT

P:FAM-CGC AAT GTG CGT TCA A-TAMRA

ITS2

Duplex 2

 Candida glabrata

F:TTT CTC CTG CCT GCG CTT AA

R:ACG CAC ACT CCC AGG TCT TT

P:VIC-AGA ACA CCC ACC AAC CGC GCA-TAMRA

ITS2

 Candida tropicalis

F: GCGGTAGGAGAATTGCGTT

R:TCATTATGCCAACATCCTAGGTTTA

P: FAM-CGCAGTCCTCAGTCTAGGCTGGCAG-TAMRA

28SrRNAD1/D2 region

Duplex 3

 Candida krusei

F:GCT GCG ACT CGC CTG AA

R:TTG TCT CGC AAC ACT CGC TCT

P:VIC-CTA GTT CGC TCG GCC AGC TTC GCT-TAMRA

ITS2

 Candida parapsilosis

F:GGG TTT GGT GTT GAG CGA TAC

R:GGA GTT TGT ACC AAT GAG TGG AAA

P: FAM-CTC CGC CTT TCT TTC AAG CAA ACC CAG-TAMRA

ITS2

  1. aF: forward, R: reverse, P: probe
  2. bITS: internal transcribed spacer