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Table 3 Interaction energy of the N12-Rha with hesperidin, naringin and myricetrin based on MM-PBSA analysis, respectively

From: Insights into glycosidic bond specificity of an engineered selective α-L-rhamnosidase N12-Rha via activity assays and molecular modelling

The interaction energy (kJ/mol)

Complexes

N12–Rha & hesperidin

N12–Rha & naringin

N12–Rha & myricetrin

Van der Waal energy

− 118.712 ± 1.244

− 93.232 ± 1.521

− 86.340 ± 1.332

Electrostatic energy

− 33.498 ± 0.431

− 23.811 ± 0.220

− 73.750 ± 0.402

Polar solvation energy

118.870 ± 1.906

86.788 ± 1.737

140.665 ± 1.834

Non–Polar solvation energy

− 18.182 ± 0.371

− 17.071 ± 0.557

− 17.644 ± 0.331

Total energy (MM–PBSA)

− 51.522 ± 0.526

− 47.326 ± 0.637

− 37.068 ± 0.855