Fig. 4
From: Housekeeping gene gyrA, a potential molecular marker for Bacillus ecology study
Alignment of the 16S rRNA and gyrA sequences of B. amyloliquefaciens (116 genomes) and B. pumilus (140 genomes). Sequences were aligned using L-INS-I method of MAFFT (v7.487). The analysis involved positions along 16S rRNA from 330–810 and along gyrA from 350–850. On the left side of the graph GCF reference numbers of genomes were displayed, with reference sequence GCF_017815555.1 displayed at the top for B. amyloliquefaciens and GCF_014269965.1 for B. pumilus. The display of base site variation was drawn using MEGA (v.5.05). The colored line (red or blue) indicates a variation of specific base sites as compared to the reference sequence