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Table 1 The sequences and concentrations of primer and probe sets used in the PCR reactions

From: Differential gene expression analysis of common target genes for the detection of SARS-CoV-2 using real time-PCR

Target

Sequence(5′-3′)

Label

Reference

2019-nCoV_N1-F

GAC CCC AAA ATC AGC GAA AT

None

(Jung et al. 2020)

2019-nCoV_N1-R

CT GGT TAC TGC CAG TTG AAT CTG

None

(Jung et al. 2020)

2019-nCoV_N1-P

FAM-ACC CCG CAT TAC GTT TGG TGG ACC-BHQ1

FAM, BHQ1

(Bruce et al. 2020)

E_Sarbeco_F1

ACAGGTACGTTAATAGCGT

None

(Corman et al. 2020a)

E_Sarbeco_R1

ATATTGCAGCAGTACGCACACA

None

(Corman et al. 2020a)

E_Sarbeco_P

Yakkima yellow-ACACTAGCCATCCTTACTGCGCTTCG-BHQ1

Yakkima yellow, BHQ1

(Corman et al. 2020a)

2019-nCoV_ RDRP-F1

GTGARATGGTCATGTGTGGCGG

None

(Corman et al. 2020a)

2019-nCoV_ RDRP-R

CARATGTTAAASACACTATTAGCATA

None

(Corman et al. 2020a)

2019-nCoV_ RDRP-P

FAM-CAGGTGGAACCTCATCAGGAGATGC-BHQ1

FAM, BHQ1

(Corman et al. 2020a)

HPRT-F

GGACTAATTATGGACAGGACTG

None

(Valadan et al. 2015a)

HPRT-R

GCTCTTCAGTCTGATAAAATCTAC

None

(Valadan et al.2015a)

HPRT-P

FAM-CCTCCCATCTCCTTCATCACATCTC–BHQ1

FAM, BHQ1

(Valadan et al. 2015a)

RP-F

AGA TTT GGA CCT GCG AGC G

None

(Gregianini et al. 2019)

RP-R

GAG CGG CTG TCT CCA CAA GT

None

(Gregianini et al. 2019)

RP-P

FAM – TTC TGA CCT GAA GGC TCT GCG CG – BHQ-1

FAM, BHQ1

(Gregianini et al. 2019)