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Table 2 Genes belonging to the transport and metabolism COG category whose expression increased by at least 1.5 times in alkaline conditions (RPKM > 100, p < 0.05)

From: Agricultural by-products and oyster shell as alternative nutrient sources for microbial sealing of early age cracks in mortar

Locus tag Gene Product pH 7 RPKM pH 10 RPKM Fold change (pH 10/pH 7)
Genes related to carbohydrate transport and metabolism
 FPV17_RS05560 ywqE Tyrosine-protein phosphatase 436.38 245.44 0.56
 FPV17_RS14580 ptsP Phosphoenolpyruvate-protein phosphotransferase 433.77 855.22 1.97
 FPV17_RS14585 ptgsH Phosphocarrier protein HPr 383.75 651.25 1.7
 FPV17_RS14895 pfkA ATP-dependent 6-phosphofructokinase 369.30 632.99 1.71
 FPV17_RS15935   2,3-Bisphosphoglycerate-independent phosphoglycerate mutase 1653.74 3078.62 1.86
 FPV17_RS15940   Triosephosphate isomerase 1799.09 3587.24 1.99
 FPV17_RS15945   Phosphoglycerate kinase 503.95 991.99 1.97
 FPV17_RS15950 gap Glyceraldehyde-3-phosphate dehydrogenase 1 995.56 1758.46 1.77
Genes related to inorganic ion transport and metabolism
 FPV17_RS00985 ecfA1 Energy-coupling factor transporter ATP-binding protein 671.65 1915.06 2.85
 FPV17_RS00990 ecfA2 Energy-coupling factor transporter ATP-binding protein 2009.30 5400.02 2.69
 FPV17_RS00995 ecfT Energy-coupling factor transporter transmembrane protein 1798.58 3928.33 2.18
 FPV17_RS08485 mnhE Na(+)/H(+) antiporter subunit E 258.53 395.44 1.53
 FPV17_RS08490 mnhD Na(+)/H(+) antiporter subunit D 289.14 613.91 2.12
 FPV17_RS08500 mnhB Na(+)/H(+) antiporter subunit B 378.13 858.10 2.27
Genes related to inorganic ion transport and metabolism
 FPV17_RS17765 ald Alanine dehydrogenase 283.32 712.21 2.51
 FPV17_RS15165   Putative aminopeptidase YtoP 618.30 931.28 1.51
Genes related to nucleotide transport and metabolism
 FPV17_RS00945   Adenylate kinase 647.51 1108.33 1.71
 FPV17_RS12920   Dihydroorotase 287.41 433.64 1.51
Genes related to lipid transport and metabolism
 FPV17_RS12755 acpP Acyl carrier protein 299.89 549.18 1.83