Table 2 Genes belonging to the transport and metabolism COG category whose expression increased by at least 1.5 times in alkaline conditions (RPKM > 100, p < 0.05)
Locus tag | Gene | Product | pH 7 RPKM | pH 10 RPKM | Fold change (pH 10/pH 7) |
|---|---|---|---|---|---|
Genes related to carbohydrate transport and metabolism | |||||
 FPV17_RS05560 | ywqE | Tyrosine-protein phosphatase | 436.38 | 245.44 | 0.56 |
 FPV17_RS14580 | ptsP | Phosphoenolpyruvate-protein phosphotransferase | 433.77 | 855.22 | 1.97 |
 FPV17_RS14585 | ptgsH | Phosphocarrier protein HPr | 383.75 | 651.25 | 1.7 |
 FPV17_RS14895 | pfkA | ATP-dependent 6-phosphofructokinase | 369.30 | 632.99 | 1.71 |
 FPV17_RS15935 |  | 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase | 1653.74 | 3078.62 | 1.86 |
 FPV17_RS15940 |  | Triosephosphate isomerase | 1799.09 | 3587.24 | 1.99 |
 FPV17_RS15945 |  | Phosphoglycerate kinase | 503.95 | 991.99 | 1.97 |
 FPV17_RS15950 | gap | Glyceraldehyde-3-phosphate dehydrogenase 1 | 995.56 | 1758.46 | 1.77 |
Genes related to inorganic ion transport and metabolism | |||||
 FPV17_RS00985 | ecfA1 | Energy-coupling factor transporter ATP-binding protein | 671.65 | 1915.06 | 2.85 |
 FPV17_RS00990 | ecfA2 | Energy-coupling factor transporter ATP-binding protein | 2009.30 | 5400.02 | 2.69 |
 FPV17_RS00995 | ecfT | Energy-coupling factor transporter transmembrane protein | 1798.58 | 3928.33 | 2.18 |
 FPV17_RS08485 | mnhE | Na(+)/H(+) antiporter subunit E | 258.53 | 395.44 | 1.53 |
 FPV17_RS08490 | mnhD | Na(+)/H(+) antiporter subunit D | 289.14 | 613.91 | 2.12 |
 FPV17_RS08500 | mnhB | Na(+)/H(+) antiporter subunit B | 378.13 | 858.10 | 2.27 |
Genes related to inorganic ion transport and metabolism | |||||
 FPV17_RS17765 | ald | Alanine dehydrogenase | 283.32 | 712.21 | 2.51 |
 FPV17_RS15165 |  | Putative aminopeptidase YtoP | 618.30 | 931.28 | 1.51 |
Genes related to nucleotide transport and metabolism | |||||
 FPV17_RS00945 |  | Adenylate kinase | 647.51 | 1108.33 | 1.71 |
 FPV17_RS12920 |  | Dihydroorotase | 287.41 | 433.64 | 1.51 |
Genes related to lipid transport and metabolism | |||||
 FPV17_RS12755 | acpP | Acyl carrier protein | 299.89 | 549.18 | 1.83 |