From: Diversity of pathogenic Pseudomonas isolated from citrus in Tunisia
Straina | WC-MALDI-TOF-MSb | Sequences identity | Final identi-fication | P. s. phylo-groupf | Box-PCR profileg | ||||
---|---|---|---|---|---|---|---|---|---|
Best match with | Score valued | ctsorrpoD gene sequence | Concanated gene sequencee | ||||||
Closest type strain | % | Closest type strain | % | ||||||
BE12A | P. congelans | 2.09 | P. congelans(rpoD) | 98.0 | P. congelans | 99.1 | P. congelans | PG02c | NA |
BE1 | P. syringae | 2.06 | P. syringae (rpoD) | 99.7 | P. syringae | 99.6 | P. syringae | PG02b | P1 |
BE3 | P. syringae | 2.01 | P. syringae (rpoD) | 99.8 | P. syringae | 99.6 | P. syringae | PG02b | P2 |
Iy3DA | P. syringae | 1.75 | P. syringae (rpoD) | 99.5 | NA | P. syringae | PG02b | NA | |
Iy3EA | P. syringae | 1.98 | P. syringae (rpoD) | 99.7 | NA | P. syringae | PG02b | NA | |
Iy3GB | P. syringae | 1.83 | P. syringae (rpoD) | 99.7 | NA | P. syringae | PG02b | NA | |
Iy5HA | P. syringae | 2.33 | P. syringae (rpoD) | 99.7 | P. syringae | 99.2 | P. syringae | PG02b | NA |
IyGA | P. syringae | 1.93 | P. syringae (rpoD) | 99.5 | NA | P. syringae | PG02b | NA | |
IyGC | P. syringae | 2.36 | P. syringae (rpoD) | 99.7 | NA | P. syringae | PG02b | P2 | |
KB49 | P. cannabina/P. syringae | 1.99/1.87 | P. syringae (rpoD) | 99.7 | NA | P. syringae | PG02b | P2 | |
KC19 | P. syringae | 2.11 | P. syringae (rpoD) | 99.7 | NA | P. syringae | PG02b | NA | |
KC29B2 | P. syringae | 1.84 | P. syringae (rpoD) | 99.5 | NA | P. syringae | PG02b | P2 | |
KC46 | P. syringae | 2.01 | P. syringae (rpoD) | 99.5 | NA | P. syringae | PG02b | NA | |
KC54 | P. syringae | 1.94 | P. syringae (rpoD) | 99.7 | NA | P. syringae | PG02b | P5 | |
KC55 | P. syringae | 2.13 | P. syringae (rpoD) | 99.7 | NA | P. syringae | PG02b | NA | |
KC82 | P. syringae | 1.99 | P. syringae (rpoD) | 99.7 | NA | P. syringae | PG02b | NA | |
TRR12 | P. syringae | 2.06 | P. syringae (rpoD) | 99.8 | P. syringae | 99.6 | P. syringae | PG02b | P2 |
TRR15 | P. syringae | 2.15 | P. syringae (rpoD) | 99.9 | NA | P. syringae | PG02b | P2 | |
TRR9 | P. syringae | 2.02 | P. syringae (rpoD) | 99.8 | P. syringae | 99.6 | P. syringae | PG02b | P2 |
MTR3B | P. congelans | 2.12 | P. congelans(rpoD) | 98.2 | NA | P. congelans | PG02c | P7 | |
E10AA | P. syringae | 1.92 | P. syringae (rpoD) | 99.7 | NA | P. syringae | PG02b | P4 | |
E10CA | P. syringae | 2.42 | P. syringae (rpoD) | 99.8 | NA | P. syringae | PG02b | P2 | |
E10CB2 | P. syringae | 2.45 | P. syringae (rpoD) | 99.7 | P. syringae | 99.2 | P. syringae | PG02b | P2 |
E11 | P. syringae | 2.19 | P. syringae (rpoD) | 99.5 | P. syringae | 99.5 | P. syringae | PG02b | NA |
E12A | P. syringae | 2.17 | P. syringae (rpoD) | 99.7 | P. syringae | 99.6 | P. syringae | PG02b | NA |
E91 | P. syringae | 2.21 | P. syringae(rpoD) | 99.5 | NA | P. syringae | PG02b | P3 | |
E93A | P. syringae | 2.46 | P. syringae(rpoD) | 97.9 | NA | P. syringae | PG02b | P6 | |
E9A | P. syringae | 2.43 | P. syringae(rpoD) | 99.7 | NA | P. syringae | PG02b | NA | |
EL1A | P. syringae | 2.11 | P. syringae(rpoD) | 99.4 | P. syringae | 99.1 | P. syringae | PG02b | NA |
EL2 | P. syringae | 1.97 | P. syringae(rpoD) | 99.5 | P. syringae | 99.3 | P. syringae | PG02b | NA |
M5* | NAc | NA | P. syringae(cts) | NA | P. syringae | PG02b | P8 | ||
M29* | NA | NA | NA | NA | P. syringae | PG02b | P8 | ||
M30* | NA | NA | NA | NA | P. syringae | PG02b | P8 | ||
M32* | NA | NA | NA | NA | P. syringae | PG02b | P8 | ||
M47* | NA | NA | P. syringae(cts) | NA | P. syringae | PG02b | P8 | ||
V2A2F14* | NA | NA | P. cerasi(cts) | NA | NA | P. cerasi | PG02a | NA | |
V2A2F15* | NA | NA | P. cerasi(cts) | NA | P. cerasi | PG02a | NA | ||
V2A2F27* | NA | NA | P. cerasi(cts) | NA | P. cerasi | PG02a | NA | ||
V2A2F45* | NA | NA | P. cerasi(cts) | NA | P. cerasi | PG02a | NA | ||
V2A2F52* | NA | NA | P. cerasi(cts) | NA | P. cerasi | PG02a | NA | ||
V2A2F79* | NA | NA | P. cerasi(cts) | NA | NA | P. cerasi | PG02a | NA |