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Table 3 All 35 predicted TFBS with regulation of downstream genes

From: Identification of stress-responsive transcription factors with protein-bound Escherichia coli genomic DNA libraries

Number

TFBS

Corresponding genes

1

RpoD16

ftr1, weel, nikC, narl, ychE, tesB

2

MetJ

ftr1, kch, ctk

3

Ihf

gaf, arcB, IIA, argB, ybaT, spy, yeiH, secA

4

FliA

motA

5

MotAB-CheAW

motA

6

CpxR

motA, ftr1

7

Crp

narl, ydiV, rrl, tyrR, ycbV, ecm18, rpoS, nuoE

8

ArgR

uhpC, maeB, tolC, mhpR, elbB, narG,

9

RpoS17

cas1e, casA,

10

RpoD17

hjr, mukF, weel, mcrB, hipA, llA, chbC, gltT, maeB, etc.

11

Lrp

mukF, spy, ugdH, ychE, elbB, ycbV

12

RpoH2

mukF, kch, ugdH, elbB,

13

Fnr

mukF, mcrB, ucpA, ugdH, yeiH

14

NagC

mukF, mcrB

15

ArgR2

IIA, argB, ybaT, ftr1, sgr, yeiH

16

DnaA

araH, hcaE

17

Fis

gshB, spy,

18

RpoD15

rrl, ctk, ftr1, ycbV

19

RpoH3

ypfG,

20

PurR

rase, bglH, fimZ, kdo

21

SoxS

narl, msyB, ychE, ecm18, IcsA

22

OmpR

gltT, thiP, ftr1, tyrR

23

ArcA

mhpR, yeiH, elbB, ybaT,

24

FlhCD

ugdH

25

TyrR

ychE, yeiH

26

GlpR

ychE, elbB

27

RpoD18

ychE, yeiH, kdo

28

MetR

tyrR

29

OxyR

yeiH

30

DeoR

yeiH

31

LexA

dtpD, elbB, fimZ, kdo, pseuo

32

PhoB

ycbV

33

LexA1

fimZ

34

LexA2

fimZ

35

NarP

rpph