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TableĀ 3 All 35 predicted TFBS with regulation of downstream genes

From: Identification of stress-responsive transcription factors with protein-bound Escherichia coli genomic DNA libraries

Number TFBS Corresponding genes
1 RpoD16 ftr1, weel, nikC, narl, ychE, tesB
2 MetJ ftr1, kch, ctk
3 Ihf gaf, arcB, IIA, argB, ybaT, spy, yeiH, secA
4 FliA motA
5 MotAB-CheAW motA
6 CpxR motA, ftr1
7 Crp narl, ydiV, rrl, tyrR, ycbV, ecm18, rpoS, nuoE
8 ArgR uhpC, maeB, tolC, mhpR, elbB, narG,
9 RpoS17 cas1e, casA,
10 RpoD17 hjr, mukF, weel, mcrB, hipA, llA, chbC, gltT, maeB, etc.
11 Lrp mukF, spy, ugdH, ychE, elbB, ycbV
12 RpoH2 mukF, kch, ugdH, elbB,
13 Fnr mukF, mcrB, ucpA, ugdH, yeiH
14 NagC mukF, mcrB
15 ArgR2 IIA, argB, ybaT, ftr1, sgr, yeiH
16 DnaA araH, hcaE
17 Fis gshB, spy,
18 RpoD15 rrl, ctk, ftr1, ycbV
19 RpoH3 ypfG,
20 PurR rase, bglH, fimZ, kdo
21 SoxS narl, msyB, ychE, ecm18, IcsA
22 OmpR gltT, thiP, ftr1, tyrR
23 ArcA mhpR, yeiH, elbB, ybaT,
24 FlhCD ugdH
25 TyrR ychE, yeiH
26 GlpR ychE, elbB
27 RpoD18 ychE, yeiH, kdo
28 MetR tyrR
29 OxyR yeiH
30 DeoR yeiH
31 LexA dtpD, elbB, fimZ, kdo, pseuo
32 PhoB ycbV
33 LexA1 fimZ
34 LexA2 fimZ
35 NarP rpph