Table 1 Interaction table
From: Identification of the natural product berberine as an antiviral drug
Hydrogen bonds | Polar | Hydrophobic | Other |
|---|---|---|---|
O2 (2) [3.34]–THR52 (OG1) | O2 (2)[2.96]–GLN18 (OE1) | C11(16) [3.82]–LEU21 (CG) | C11 (16)[3.79]–GLN18 (NE2, OE1) |
|  | O1 (1)[3.21]–THR52 (OG1) | C10 (15)[3.65]–VAL25 (CG2) | C13 (18)[3.76]–GLN18 (OE1) |
|  |  | C12 (17)[3.48]–VAL25 (CG2) | O2 (2)[3.69]–GLN22 (CG) |
|  |  | C10 (15)[3.12]– ILE48 (CB, CG2) | C17 (22)[3.16]–GLN22 (CG) |
|  |  | C1 (6)[3.32]–TYR51 (CB, CD2, CG) | O1 (1)[3.12]–VAL25 (CB, CG2) |
|  |  | C3 (8)[3.70]–ILE55 (CD1) | O1 (1)[3.37]–ILE48 (CD1) |
|  |  | C7 (12)[3.37]–ILE55 (CD1) | N1 (5)[3.85]–TYR51 (CB) |
|  |  | C9 (14)[3.87]–ILE55 (CD1) | C10 (15)[3.88]–THR52 (OG1) |
|  |  | C11 (16)[3.83]–ILE55 (CD1) | C12 (17)[3.21]–THR52 (OG1) |
|  |  |  | C13 (18)[3.28]–THR52 (OG1) |
|  |  |  | C17 (22)[3.23]–THR52 (OG1) |