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Table 1 Annotations of the KEGG pathway for DEGs on day 10

From: Comprehensive transcriptomic and proteomic analyses of antroquinonol biosynthetic genes and enzymes in Antrodia camphorata

Pathway Pathway ID Ratio in study P-value Genes
Pyruvate metabolism map00620 8/190 0.00112 lldD; IMS; ACACA; atoB; FH; ALDH; maeB; pckA
Arginine and proline metabolism map00330 4/190 0.00033 amiE; PRODH; ALDH; speB
Starch and sucrose metabolism map00500 7/190 0.00102 TPS; GPI; E3.2.1.58; UGP2; E2.4.1.34; AGL; bglX
Lysine degradation map00310 6/190 0.00069 SUV39H; OGDH; ALDH; EZH2; ECHS1; atoB
Cyanoamino acid metabolism map00460 3/190 0.00018 CD224; ggt; bglX
Citrate cycle (TCA cycle) map00020 7/190 0.00096 OGDH; fumC; ACO; ACLY; SDHA; pckA; CS
Valine, leucine and isoleucine degradation map00280 7/190 0.00062 E2.3.3.10; atoB; OXCT; IVD; ALDH; ECHS1; HIBADH
Pentose and glucuronate interconversions map00040 5/190 0.00202 XYLB; UGP2; SORD; ALDH; ARD1
Tryptophan metabolism map00380 5/190 0.00230 OGDH; ALDH; ECHS1; amiE; atoB
Synthesis and degradation of ketone bodies map00072 3/190 0.00295 OXCT; E2.3.3.10; atoB
Beta-alanine metabolism map00410 3/190 0.00427 AOC3; ALDH; ECHS1
Amino sugar and nucleotide sugar metabolism map00520 9/190 0.00900 manC; HEXA_B; GPI; E3.2.1.14; UGP2; E1.6.2.2; CHS1; nagZ; abfA
Phenylalanine metabolism map00360 3/190 0.01252 AOC3; PAAH; amiE
Butanoate metabolism map00650 5/190 0.01611 OXCT; PAAH; ECHS1; E2.3.3.10; atoB
Nitrogen metabolism map00910 2/190 0.01972 NIT-6; NR
Fatty acid degradation map00071 3/190 0.02598 ALDH; ECHS1; atoB
Fatty acid biosynthesis map00061 4/190 0.03441 FAS2; ACACA; fabG; FAS1
Glutathione metabolism map00480 5/190 0.03960 CD224; GST; ggt; PGD; OPLAH
Ubiquinone and other terpenoid-quinone biosynthesis map00130 2/190 0.04361 CoQ5; CoQ2
Glycosphingolipid biosynthesis-globo and isoglobo series map00603 2/190 0.04361 galA; HEXA_B