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Table 1 Annotations of the KEGG pathway for DEGs on day 10

From: Comprehensive transcriptomic and proteomic analyses of antroquinonol biosynthetic genes and enzymes in Antrodia camphorata

Pathway

Pathway ID

Ratio in study

P-value

Genes

Pyruvate metabolism

map00620

8/190

0.00112

lldD; IMS; ACACA; atoB; FH; ALDH; maeB; pckA

Arginine and proline metabolism

map00330

4/190

0.00033

amiE; PRODH; ALDH; speB

Starch and sucrose metabolism

map00500

7/190

0.00102

TPS; GPI; E3.2.1.58; UGP2; E2.4.1.34; AGL; bglX

Lysine degradation

map00310

6/190

0.00069

SUV39H; OGDH; ALDH; EZH2; ECHS1; atoB

Cyanoamino acid metabolism

map00460

3/190

0.00018

CD224; ggt; bglX

Citrate cycle (TCA cycle)

map00020

7/190

0.00096

OGDH; fumC; ACO; ACLY; SDHA; pckA; CS

Valine, leucine and isoleucine degradation

map00280

7/190

0.00062

E2.3.3.10; atoB; OXCT; IVD; ALDH; ECHS1; HIBADH

Pentose and glucuronate interconversions

map00040

5/190

0.00202

XYLB; UGP2; SORD; ALDH; ARD1

Tryptophan metabolism

map00380

5/190

0.00230

OGDH; ALDH; ECHS1; amiE; atoB

Synthesis and degradation of ketone bodies

map00072

3/190

0.00295

OXCT; E2.3.3.10; atoB

Beta-alanine metabolism

map00410

3/190

0.00427

AOC3; ALDH; ECHS1

Amino sugar and nucleotide sugar metabolism

map00520

9/190

0.00900

manC; HEXA_B; GPI; E3.2.1.14; UGP2; E1.6.2.2; CHS1; nagZ; abfA

Phenylalanine metabolism

map00360

3/190

0.01252

AOC3; PAAH; amiE

Butanoate metabolism

map00650

5/190

0.01611

OXCT; PAAH; ECHS1; E2.3.3.10; atoB

Nitrogen metabolism

map00910

2/190

0.01972

NIT-6; NR

Fatty acid degradation

map00071

3/190

0.02598

ALDH; ECHS1; atoB

Fatty acid biosynthesis

map00061

4/190

0.03441

FAS2; ACACA; fabG; FAS1

Glutathione metabolism

map00480

5/190

0.03960

CD224; GST; ggt; PGD; OPLAH

Ubiquinone and other terpenoid-quinone biosynthesis

map00130

2/190

0.04361

CoQ5; CoQ2

Glycosphingolipid biosynthesis-globo and isoglobo series

map00603

2/190

0.04361

galA; HEXA_B