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Table 3 Genomic features defining the lifestyle of oligotrophic H. latericoloratus CGMCC 16346 and copiotrophic P. indica CGMCC 6648

From: Oligotrophic bacterium Hymenobacter latericoloratus CGMCC 16346 degrades the neonicotinoid imidacloprid in surface water

MarkerH. latericoloratus CGMCC 16346P. indica CGMCC 6648
Genome size (bp)5037,2254,304,170
Total gene numbers44243935
16S rRNA gene copy numbers33
Total COG numbers29702665
COG category
 BChromatin structure and dynamics21
 CEnergy production and conversion156 (5.25%)163 (6.12%)
 DCell cycle control and mitosis29 (0.98%)28 (1.05%)
 EAmino acid metabolism and transport208 (7.00%)221 (8.29%)
 FNucleotide metabolism and transport63 (2.12%)56 (2.10%)
 GCarbohydrate metabolism and transport202 (6.80%)143 (5.37%)
 HCoenzyme metabolism155 (5.22%)113 (4.24%)
 ILipid metabolism155 (5.22%)109 (4.09%)
 JTranslation218 (7.34%)171 (6.42%)
 KTranscription163 (5.49%)200 (7.50%)
 LReplication and repair106 (3.57%)108 (4.05%)
 MCell wall/membrane/envelope biogenesis246 (8.28%)146 (5.48%)
 NCell motility29 (0.98%)71 (2.66%)
 OPost-translational modification, protein turnover, chaperone functions164 (5.52%)126 (4.73%)
 PInorganic ion transport and metabolism161 (5.42%)132 (4.95%)
 QSecondary metabolites biosynthesis, transport and catabolism86 (2.90%)75 (2.81%)
 RGeneral functional prediction only (typically, prediction of biochemical activity)349 (11.75%)336 (12.61%)
 SFunction unknown168 (5.66%)227 (8.52%)
 TSignal transduction155 (5.22%)118 (4.43%)
 UIntracellular trafficking and secretion30 (1.01%)77 (2.89%)
 VDefense mechanisms89 (3.00%)43 (1.61%)
 Cytochrome P45020