Table 3 Genomic features defining the lifestyle of oligotrophic H. latericoloratus CGMCC 16346 and copiotrophic P. indica CGMCC 6648
Marker | H. latericoloratus CGMCC 16346 | P. indica CGMCC 6648 | |
|---|---|---|---|
Genome size (bp) | 5037,225 | 4,304,170 | |
Total gene numbers | 4424 | 3935 | |
16S rRNA gene copy numbers | 3 | 3 | |
Total COG numbers | 2970 | 2665 | |
COG category | |||
B | Chromatin structure and dynamics | 2 | 1 |
C | Energy production and conversion | 156 (5.25%) | 163 (6.12%) |
D | Cell cycle control and mitosis | 29 (0.98%) | 28 (1.05%) |
E | Amino acid metabolism and transport | 208 (7.00%) | 221 (8.29%) |
F | Nucleotide metabolism and transport | 63 (2.12%) | 56 (2.10%) |
G | Carbohydrate metabolism and transport | 202 (6.80%) | 143 (5.37%) |
H | Coenzyme metabolism | 155 (5.22%) | 113 (4.24%) |
I | Lipid metabolism | 155 (5.22%) | 109 (4.09%) |
J | Translation | 218 (7.34%) | 171 (6.42%) |
K | Transcription | 163 (5.49%) | 200 (7.50%) |
L | Replication and repair | 106 (3.57%) | 108 (4.05%) |
M | Cell wall/membrane/envelope biogenesis | 246 (8.28%) | 146 (5.48%) |
N | Cell motility | 29 (0.98%) | 71 (2.66%) |
O | Post-translational modification, protein turnover, chaperone functions | 164 (5.52%) | 126 (4.73%) |
P | Inorganic ion transport and metabolism | 161 (5.42%) | 132 (4.95%) |
Q | Secondary metabolites biosynthesis, transport and catabolism | 86 (2.90%) | 75 (2.81%) |
R | General functional prediction only (typically, prediction of biochemical activity) | 349 (11.75%) | 336 (12.61%) |
S | Function unknown | 168 (5.66%) | 227 (8.52%) |
T | Signal transduction | 155 (5.22%) | 118 (4.43%) |
U | Intracellular trafficking and secretion | 30 (1.01%) | 77 (2.89%) |
V | Defense mechanisms | 89 (3.00%) | 43 (1.61%) |
Cytochrome P450 | 2 | 0 | |