TY - JOUR AU - Amore, R. AU - Wilhelm, M. AU - Hollenberg, C. P. PY - 1989 DA - 1989// TI - The fermentation of xylose—an analysis of the expression of Bacillus and Actinoplanes xylose isomerase genes in yeast JO - Appl Microbiol Biotechnol VL - 30 UR - https://doi.org/10.1007/BF00296623 DO - 10.1007/BF00296623 ID - Amore1989 ER - TY - JOUR AU - Atsumi, S. AU - Hanai, T. AU - Liao, J. C. PY - 2008 DA - 2008// TI - Non-fermentative pathways for synthesis of branched-chain higher alcohols as biofuels JO - Nature VL - 451 UR - https://doi.org/10.1038/nature06450 DO - 10.1038/nature06450 ID - Atsumi2008 ER - TY - JOUR AU - Atsumi, S. AU - Higashide, W. AU - Liao, J. C. PY - 2009 DA - 2009// TI - Direct photosynthetic recycling of carbon dioxide to isobutyraldehyde JO - Nat Biotechnol VL - 27 UR - https://doi.org/10.1038/nbt.1586 DO - 10.1038/nbt.1586 ID - Atsumi2009 ER - TY - JOUR AU - Avalos, J. L. AU - Fink, G. R. AU - Stephanopoulos, G. PY - 2013 DA - 2013// TI - Compartmentalization of metabolic pathways in yeast mitochondria improves the production of branched-chain alcohols JO - Nat Biotechnol VL - 31 UR - https://doi.org/10.1038/nbt.2509 DO - 10.1038/nbt.2509 ID - Avalos2013 ER - TY - JOUR AU - Baek, S. H. AU - Kwon, E. Y. AU - Bae, S. J. AU - Cho, B. R. AU - Kim, S. Y. AU - Hahn, J. S. PY - 2017 DA - 2017// TI - Improvement of d-lactic acid production in Saccharomyces cerevisiae under acidic conditions by evolutionary and rational metabolic engineering JO - Biotechnol J VL - 12 UR - https://doi.org/10.1002/biot.201700015 DO - 10.1002/biot.201700015 ID - Baek2017 ER - TY - JOUR AU - Baker Brachmann, C. AU - Davies, A. AU - Cost, G. J. AU - Caputo, E. AU - Li, J. AU - Hieter, P. AU - Boeke, J. D. PY - 1998 DA - 1998// TI - Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications JO - Yeast VL - 14 UR - https://doi.org/3.0.CO;2-2 DO - 3.0.CO;2-2 ID - Baker Brachmann1998 ER - TY - JOUR AU - Boeke, J. D. AU - LaCroute, F. AU - Fink, G. R. PY - 1984 DA - 1984// TI - A positive selection for mutants lacking orotidine-5′-phosphate decarboxylase activity in yeast: 5-fluoro-orotic acid resistance JO - Mol Gen Genet VL - 197 UR - https://doi.org/10.1007/BF00330984 DO - 10.1007/BF00330984 ID - Boeke1984 ER - TY - JOUR AU - Brat, D. AU - Boles, E. PY - 2013 DA - 2013// TI - Isobutanol production from D-xylose by recombinant Saccharomyces cerevisiae JO - FEMS Yeast Res VL - 13 UR - https://doi.org/10.1111/1567-1364.12028 DO - 10.1111/1567-1364.12028 ID - Brat2013 ER - TY - JOUR AU - Buijs, N. A. AU - Zhou, Y. J. AU - Siewers, V. AU - Nielsen, J. PY - 2015 DA - 2015// TI - Long-chain alkane production by the yeast Saccharomyces cerevisiae JO - Biotechnol Bioeng VL - 112 UR - https://doi.org/10.1002/bit.25522 DO - 10.1002/bit.25522 ID - Buijs2015 ER - TY - JOUR AU - Cam, Y. AU - Alkim, C. AU - Trichez, D. AU - Trebosc, V. AU - Vax, A. AU - Bartolo, F. AU - Besse, P. AU - Francois, J. M. AU - Walther, T. PY - 2016 DA - 2016// TI - Engineering of a synthetic metabolic pathway for the assimilation of (d)-xylose into value-added chemicals JO - ACS Synth Biol VL - 5 UR - https://doi.org/10.1021/acssynbio.5b00103 DO - 10.1021/acssynbio.5b00103 ID - Cam2016 ER - TY - JOUR AU - Chee, M. K. AU - Haase, S. B. PY - 2012 DA - 2012// TI - New and redesigned pRS plasmid shuttle vectors for genetic manipulation of Saccharomyces cerevisiae JO - G3 (Bethesda) VL - 2 UR - https://doi.org/10.1534/g3.111.001917 DO - 10.1534/g3.111.001917 ID - Chee2012 ER - TY - JOUR AU - Choi, Y. J. AU - Lee, S. Y. PY - 2013 DA - 2013// TI - Microbial production of short-chain alkanes JO - Nature VL - 502 UR - https://doi.org/10.1038/nature12536 DO - 10.1038/nature12536 ID - Choi2013 ER - TY - JOUR AU - Chomvong, K. AU - Bauer, S. AU - Benjamin, D. I. AU - Li, X. AU - Nomura, D. K. AU - Cate, J. H. PY - 2016 DA - 2016// TI - Bypassing the pentose phosphate pathway: towards modular utilization of xylose JO - PLoS ONE VL - 11 UR - https://doi.org/10.1371/journal.pone.0158111 DO - 10.1371/journal.pone.0158111 ID - Chomvong2016 ER - TY - JOUR AU - DeRisi, J. L. AU - Iyer, V. R. AU - Brown, P. O. PY - 1997 DA - 1997// TI - Exploring the metabolic and genetic control of gene expression on a genomic scale JO - Science VL - 278 UR - https://doi.org/10.1126/science.278.5338.680 DO - 10.1126/science.278.5338.680 ID - DeRisi1997 ER - TY - JOUR AU - Egner, A. AU - Jakobs, S. AU - Hell, S. W. PY - 2002 DA - 2002// TI - Fast 100-nm resolution three-dimensional microscope reveals structural plasticity of mitochondria in live yeast JO - Proc Natl Acad Sci USA VL - 99 UR - https://doi.org/10.1073/pnas.052545099 DO - 10.1073/pnas.052545099 ID - Egner2002 ER - TY - JOUR AU - Ehrensberger, A. H. AU - Elling, R. A. AU - Wilson, D. K. PY - 2006 DA - 2006// TI - Structure-guided engineering of xylitol dehydrogenase cosubstrate specificity JO - Structure VL - 14 UR - https://doi.org/10.1016/j.str.2005.11.016 DO - 10.1016/j.str.2005.11.016 ID - Ehrensberger2006 ER - TY - JOUR AU - Flores, A. AU - Wang, X. AU - Nielsen, D. R. PY - 2019 DA - 2019// TI - Recent trends in integrated bioprocesses: aiding and expanding microbial biofuel/biochemical production JO - Curr Opin Biotechnol VL - 57 UR - https://doi.org/10.1016/j.copbio.2019.02.007 DO - 10.1016/j.copbio.2019.02.007 ID - Flores2019 ER - TY - JOUR AU - Generoso, W. C. AU - Schadeweg, V. AU - Oreb, M. AU - Boles, E. PY - 2015 DA - 2015// TI - Metabolic engineering of Saccharomyces cerevisiae for production of butanol isomers JO - Curr Opin Biotechnol VL - 33 UR - https://doi.org/10.1016/j.copbio.2014.09.004 DO - 10.1016/j.copbio.2014.09.004 ID - Generoso2015 ER - TY - JOUR AU - Gietz, R. D. AU - Schiestl, R. H. PY - 2007 DA - 2007// TI - Frozen competent yeast cells that can be transformed with high efficiency using the LiAc/SS carrier DNA/PEG method JO - Nat Protoc VL - 2 UR - https://doi.org/10.1038/nprot.2007.17 DO - 10.1038/nprot.2007.17 ID - Gietz2007 ER - TY - JOUR AU - Gietz, R. D. AU - Schiestl, R. H. PY - 2007 DA - 2007// TI - High-efficiency yeast transformation using the LiAc/SS carrier DNA/PEG method JO - Nat Protoc VL - 2 UR - https://doi.org/10.1038/nprot.2007.13 DO - 10.1038/nprot.2007.13 ID - Gietz2007 ER - TY - JOUR AU - Gueldener, U. AU - Heinisch, J. AU - Koehler, G. J. AU - Voss, D. AU - Hegemann, J. H. PY - 2002 DA - 2002// TI - A second set of loxP marker cassettes for Cre-mediated multiple gene knockouts in budding yeast JO - Nucleic Acids Res VL - 30 UR - https://doi.org/10.1093/nar/30.6.e23 DO - 10.1093/nar/30.6.e23 ID - Gueldener2002 ER - TY - JOUR AU - Guo, W. AU - Sheng, J. AU - Zhao, H. AU - Feng, X. PY - 2016 DA - 2016// TI - Metabolic engineering of Saccharomyces cerevisiae to produce 1-hexadecanol from xylose JO - Microb Cell Fact VL - 15 UR - https://doi.org/10.1186/s12934-016-0423-9 DO - 10.1186/s12934-016-0423-9 ID - Guo2016 ER - TY - JOUR AU - Hegemann, J. H. AU - Heick, S. B. PY - 2011 DA - 2011// TI - Delete and repeat: a comprehensive toolkit for sequential gene knockout in the budding yeast Saccharomyces cerevisiae JO - Methods Mol Biol VL - 765 UR - https://doi.org/10.1007/978-1-61779-197-0_12 DO - 10.1007/978-1-61779-197-0_12 ID - Hegemann2011 ER - TY - JOUR AU - Johansson, B. AU - Christensson, C. AU - Hobley, T. AU - Hahn-Hagerdal, B. PY - 2001 DA - 2001// TI - Xylulokinase overexpression in two strains of Saccharomyces cerevisiae also expressing xylose reductase and xylitol dehydrogenase and its effect on fermentation of xylose and lignocellulosic hydrolysate JO - Appl Environ Microbiol VL - 67 UR - https://doi.org/10.1128/AEM.67.9.4249-4255.2001 DO - 10.1128/AEM.67.9.4249-4255.2001 ID - Johansson2001 ER - TY - JOUR AU - Karhumaa, K. AU - Garcia Sanchez, R. AU - Hahn-Hagerdal, B. AU - Gorwa-Grauslund, M. F. PY - 2007 DA - 2007// TI - Comparison of the xylose reductase-xylitol dehydrogenase and the xylose isomerase pathways for xylose fermentation by recombinant Saccharomyces cerevisiae JO - Microb Cell Fact VL - 6 UR - https://doi.org/10.1186/1475-2859-6-5 DO - 10.1186/1475-2859-6-5 ID - Karhumaa2007 ER - TY - JOUR AU - Kim, S. R. AU - Skerker, J. M. AU - Kang, W. AU - Lesmana, A. AU - Wei, N. AU - Arkin, A. P. AU - Jin, Y. S. PY - 2013 DA - 2013// TI - Rational and evolutionary engineering approaches uncover a small set of genetic changes efficient for rapid xylose fermentation in Saccharomyces cerevisiae JO - PLoS ONE VL - 8 UR - https://doi.org/10.1371/journal.pone.0057048 DO - 10.1371/journal.pone.0057048 ID - Kim2013 ER - TY - JOUR AU - Kwak, S. AU - Jin, Y. S. PY - 2017 DA - 2017// TI - Production of fuels and chemicals from xylose by engineered Saccharomyces cerevisiae: a review and perspective JO - Microb Cell Fact VL - 16 UR - https://doi.org/10.1186/s12934-017-0694-9 DO - 10.1186/s12934-017-0694-9 ID - Kwak2017 ER - TY - JOUR AU - Lamsen, E. N. AU - Atsumi, S. PY - 2012 DA - 2012// TI - Recent progress in synthetic biology for microbial production of C3-C10 alcohols JO - Front Microbiol VL - 3 UR - https://doi.org/10.3389/fmicb.2012.00196 DO - 10.3389/fmicb.2012.00196 ID - Lamsen2012 ER - TY - JOUR AU - Lee, J. W. AU - Na, D. AU - Park, J. M. AU - Lee, J. AU - Choi, S. AU - Lee, S. Y. PY - 2012 DA - 2012// TI - Systems metabolic engineering of microorganisms for natural and non-natural chemicals JO - Nat Chem Biol VL - 8 UR - https://doi.org/10.1038/nchembio.970 DO - 10.1038/nchembio.970 ID - Lee2012 ER - TY - JOUR AU - Li, X. AU - Park, A. AU - Estrela, R. AU - Kim, S. R. AU - Jin, Y. S. AU - Cate, J. H. PY - 2016 DA - 2016// TI - Comparison of xylose fermentation by two high-performance engineered strains of Saccharomyces cerevisiae JO - Biotechnol Rep (Amst) VL - 9 UR - https://doi.org/10.1016/j.btre.2016.01.003 DO - 10.1016/j.btre.2016.01.003 ID - Li2016 ER - TY - JOUR AU - Li, X. AU - Chen, Y. AU - Nielsen, J. PY - 2019 DA - 2019// TI - Harnessing xylose pathways for biofuels production JO - Curr Opin Biotechnol VL - 57 UR - https://doi.org/10.1016/j.copbio.2019.01.006 DO - 10.1016/j.copbio.2019.01.006 ID - Li2019 ER - TY - JOUR AU - Liao, J. C. AU - Mi, L. AU - Pontrelli, S. AU - Luo, S. PY - 2016 DA - 2016// TI - Fuelling the future: microbial engineering for the production of sustainable biofuels JO - Nat Rev Microbiol VL - 14 UR - https://doi.org/10.1038/nrmicro.2016.32 DO - 10.1038/nrmicro.2016.32 ID - Liao2016 ER - TY - JOUR AU - Lu, J. AU - Brigham, C. J. AU - Gai, C. S. AU - Sinskey, A. J. PY - 2012 DA - 2012// TI - Studies on the production of branched-chain alcohols in engineered Ralstonia eutropha JO - Appl Microbiol Biotechnol VL - 96 UR - https://doi.org/10.1007/s00253-012-4320-9 DO - 10.1007/s00253-012-4320-9 ID - Lu2012 ER - TY - JOUR AU - Matsuda, F. AU - Ishii, J. AU - Kondo, T. AU - Ida, K. AU - Tezuka, H. AU - Kondo, A. PY - 2013 DA - 2013// TI - Increased isobutanol production in Saccharomyces cerevisiae by eliminating competing pathways and resolving cofactor imbalance JO - Microb Cell Fact VL - 12 UR - https://doi.org/10.1186/1475-2859-12-119 DO - 10.1186/1475-2859-12-119 ID - Matsuda2013 ER - TY - JOUR AU - Moes, C. J. AU - Pretorius, I. S. AU - Zyl, W. H. PY - 1996 DA - 1996// TI - Cloning and expression of the Clostridium thermosulfurogenes D-xylose isomerase gene (xyLA) in Saccharomyces cerevisiae JO - Biotech Lett VL - 18 UR - https://doi.org/10.1007/BF00142943 DO - 10.1007/BF00142943 ID - Moes1996 ER - TY - JOUR AU - Mosier, N. AU - Wyman, C. AU - Dale, B. AU - Elander, R. AU - Lee, Y. Y. AU - Holtzapple, M. AU - Ladisch, M. PY - 2005 DA - 2005// TI - Features of promising technologies for pretreatment of lignocellulosic biomass JO - Bioresour Technol VL - 96 UR - https://doi.org/10.1016/j.biortech.2004.06.025 DO - 10.1016/j.biortech.2004.06.025 ID - Mosier2005 ER - TY - JOUR AU - Moyses, D. N. AU - Reis, V. C. AU - Almeida, J. R. AU - Moraes, L. M. AU - Torres, F. A. PY - 2016 DA - 2016// TI - Xylose Fermentation by Saccharomyces cerevisiae: challenges and Prospects JO - Int J Mol Sci VL - 17 UR - https://doi.org/10.3390/ijms17030207 DO - 10.3390/ijms17030207 ID - Moyses2016 ER - TY - JOUR AU - Parreiras, L. S. AU - Breuer, R. J. AU - Avanasi Narasimhan, R. AU - Higbee, A. J. AU - Reau, A. AU - Tremaine, M. AU - Qin, L. AU - Willis, L. B. AU - Bice, B. D. AU - Bonfert, B. L. AU - Pinhancos, R. C. AU - Balloon, A. J. AU - Uppugundla, N. AU - Liu, T. AU - Li, C. AU - Tanjore, D. AU - Ong, I. M. AU - Li, H. AU - Pohlmann, E. L. AU - Serate, J. AU - Withers, S. T. AU - Simmons, B. A. AU - Hodge, D. B. AU - Westphall, M. S. AU - Coon, J. J. AU - Dale, B. E. AU - Balan, V. AU - Keating, D. H. AU - Zhang, Y. AU - Landick, R. AU - Gasch, A. P. AU - Sato, T. K. PY - 2014 DA - 2014// TI - Engineering and two-stage evolution of a lignocellulosic hydrolysate-tolerant Saccharomyces cerevisiae strain for anaerobic fermentation of xylose from AFEX pretreated corn stover JO - PLoS ONE VL - 9 UR - https://doi.org/10.1371/journal.pone.0107499 DO - 10.1371/journal.pone.0107499 ID - Parreiras2014 ER - TY - JOUR AU - Peralta-Yahya, P. P. AU - Ouellet, M. AU - Chan, R. AU - Mukhopadhyay, A. AU - Keasling, J. D. AU - Lee, T. S. PY - 2011 DA - 2011// TI - Identification and microbial production of a terpene-based advanced biofuel JO - Nat Commun VL - 2 UR - https://doi.org/10.1038/ncomms1494 DO - 10.1038/ncomms1494 ID - Peralta-Yahya2011 ER - TY - JOUR AU - Peralta-Yahya, P. P. AU - Zhang, F. AU - Cardayre, S. B. AU - Keasling, J. D. PY - 2012 DA - 2012// TI - Microbial engineering for the production of advanced biofuels JO - Nature VL - 488 UR - https://doi.org/10.1038/nature11478 DO - 10.1038/nature11478 ID - Peralta-Yahya2012 ER - TY - JOUR AU - Reider Apel, A. AU - Ouellet, M. AU - Szmidt-Middleton, H. AU - Keasling, J. D. AU - Mukhopadhyay, A. PY - 2016 DA - 2016// TI - Evolved hexose transporter enhances xylose uptake and glucose/xylose co-utilization in Saccharomyces cerevisiae JO - Sci Rep VL - 6 UR - https://doi.org/10.1038/srep19512 DO - 10.1038/srep19512 ID - Reider Apel2016 ER - TY - JOUR AU - Reider Apel, A. AU - d’Espaux, L. AU - Wehrs, M. AU - Sachs, D. AU - Li, R. A. AU - Tong, G. J. AU - Garber, M. AU - Nnadi, O. AU - Zhuang, W. AU - Hillson, N. J. AU - Keasling, J. D. AU - Mukhopadhyay, A. PY - 2017 DA - 2017// TI - A Cas9-based toolkit to program gene expression in Saccharomyces cerevisiae JO - Nucleic Acids Res VL - 45 UR - https://doi.org/10.1093/nar/gkw1023 DO - 10.1093/nar/gkw1023 ID - Reider Apel2017 ER - TY - JOUR AU - Runguphan, W. AU - Keasling, J. D. PY - 2014 DA - 2014// TI - Metabolic engineering of Saccharomyces cerevisiae for production of fatty acid-derived biofuels and chemicals JO - Metab Eng VL - 21 UR - https://doi.org/10.1016/j.ymben.2013.07.003 DO - 10.1016/j.ymben.2013.07.003 ID - Runguphan2014 ER - TY - JOUR AU - Ryan, M. D. AU - Drew, J. PY - 1994 DA - 1994// TI - Foot-and-mouth disease virus 2A oligopeptide mediated cleavage of an artificial polyprotein JO - EMBO J VL - 13 UR - https://doi.org/10.1002/j.1460-2075.1994.tb06337.x DO - 10.1002/j.1460-2075.1994.tb06337.x ID - Ryan1994 ER - TY - JOUR AU - Sarthy, A. V. AU - McConaughy, B. L. AU - Lobo, Z. AU - Sundstrom, J. A. AU - Furlong, C. E. AU - Hall, B. D. PY - 1987 DA - 1987// TI - Expression of the Escherichia coli xylose isomerase gene in Saccharomyces cerevisiae JO - Appl Environ Microbiol VL - 53 ID - Sarthy1987 ER - TY - JOUR AU - Schneider, J. C. AU - Guarente, L. PY - 1991 DA - 1991// TI - Vectors for expression of cloned genes in yeast: regulation, overproduction, and underproduction JO - Methods Enzymol VL - 194 UR - https://doi.org/10.1016/0076-6879(91)94028-B DO - 10.1016/0076-6879(91)94028-B ID - Schneider1991 ER - TY - JOUR AU - Siripong, W. AU - Wolf, P. AU - Kusumoputri, T. P. AU - Downes, J. J. AU - Kocharin, K. AU - Tanapongpipat, S. AU - Runguphan, W. PY - 2018 DA - 2018// TI - Metabolic engineering of Pichia pastoris for production of isobutanol and isobutyl acetate JO - Biotechnol Biofuels VL - 11 UR - https://doi.org/10.1186/s13068-017-1003-x DO - 10.1186/s13068-017-1003-x ID - Siripong2018 ER - TY - JOUR AU - Tai, M. AU - Stephanopoulos, G. PY - 2013 DA - 2013// TI - Engineering the push and pull of lipid biosynthesis in oleaginous yeast Yarrowia lipolytica for biofuel production JO - Metab Eng VL - 15 UR - https://doi.org/10.1016/j.ymben.2012.08.007 DO - 10.1016/j.ymben.2012.08.007 ID - Tai2013 ER - TY - JOUR AU - Watanabe, S. AU - Saleh, A. A. AU - Pack, S. P. AU - Annaluru, N. AU - Kodaki, T. AU - Makino, K. PY - 2007 DA - 2007// TI - Ethanol production from xylose by recombinant Saccharomyces cerevisiae expressing protein engineered NADP+-dependent xylitol dehydrogenase JO - J Biotechnol VL - 130 UR - https://doi.org/10.1016/j.jbiotec.2007.04.019 DO - 10.1016/j.jbiotec.2007.04.019 ID - Watanabe2007 ER - TY - JOUR AU - Xu, H. AU - Kim, S. AU - Sorek, H. AU - Lee, Y. AU - Jeong, D. AU - Kim, J. AU - Oh, E. J. AU - Yun, E. J. AU - Wemmer, D. E. AU - Kim, K. H. AU - Kim, S. R. AU - Jin, Y. S. PY - 2016 DA - 2016// TI - PHO13 deletion-induced transcriptional activation prevents sedoheptulose accumulation during xylose metabolism in engineered Saccharomyces cerevisiae JO - Metab Eng VL - 34 UR - https://doi.org/10.1016/j.ymben.2015.12.007 DO - 10.1016/j.ymben.2015.12.007 ID - Xu2016 ER - TY - JOUR AU - Zhang, B. AU - Sun, H. AU - Li, J. AU - Wan, Y. AU - Li, Y. AU - Zhang, Y. PY - 2016 DA - 2016// TI - High-titer-ethanol production from cellulosic hydrolysate by an engineered strain of Saccharomyces cerevisiae during an in situ removal process reducing the inhibition of ethanol on xylose metabolism JO - Process Biochem VL - 51 UR - https://doi.org/10.1016/j.procbio.2016.04.019 DO - 10.1016/j.procbio.2016.04.019 ID - Zhang2016 ER -