NfiS, a species-specific regulatory noncoding RNA of Pseudomonas stutzeri, enhances oxidative stress tolerance in Escherichia coli

Hu, Guihua; Hu, Tao; Zhan, Yuhua; Lu, Wei; Lin, Min; Huang, Yunhong; Yan, Yongliang

doi:10.1186/s13568-019-0881-7

AMB Express

Table 2 NfiS target prediction

From: NfiS, a species-specific regulatory noncoding RNA of Pseudomonas stutzeri, enhances oxidative stress tolerance in Escherichia coli

Putative target	Gene	Fold change	Annotation	P-value	Energy
b2358	oweS	− 1.11	Pseudogene CPS-53 (KpLE1) prophage bacteriophage replication protein O family phage or prophage related	6.96E−05	− 34.32
b3654	xanP	1.03	Xanthine permease	6.96E−05	− 34.31
b2536	hcaT	− 1.02	Putative 3-phenylpropionic transporter	5.03E−04	− 30.89
b3603	lldP	2.13	L-lactate permease	6.31E−04	− 30.47
b2576	srmB	1.49	ATP-dependent RNA helicase	6.91E−04	− 30.29
b2611	ypjD	3.41	Cytochrome c assembly protein family inner membrane protein	7.96E−04	− 30.03
b3783	rho	− 4.69	Transcription termination factor	1.18E−03	− 29.28
b3096	mzrA	− 2.50	Modulator of EnvZ/OmpR regulon	1.22E−03	− 29.21
b1061	dinI	− 1.93	DNA damage-inducible protein I	1.23E−03	− 29.20
b3060	ttdR	− 1.06	Transcriptional activator of ttdABT	1.28E−03	− 29.11
b1125	potB	1.05	Spermidine/putrescine ABC transporter permease	1.53E−03	− 28.76
b0920	elyC	2.64	Envelope biogenesis factor DUF218 superfamily protein	1.56E−03	− 28.73
b2135	yohC	− 4.70	Yip1 family inner membrane protein	2.18E−03	− 28.06
b2475	ypfJ	− 1.26	Putative neutral zinc metallopeptidase	2.24E−03	− 28.00
b0338	cynR	2.07	Transcriptional activator of cyn operon autorepressor	2.32E−03	− 27.93
b3592	yibF	− 1.38	Glutathione S-transferase homolog	2.58E−03	− 27.72
b3234	degQ	1.06	Serine endoprotease periplasmic	2.94E−03	− 27.45
b3946	fsaB	1.74	Fructose-6-phosphate aldolase 2	3.38E−03	− 27.16
b3413	gntX	1.73	DNA catabolic protein	3.60E−03	− 27.03
b0269	yagF	− 17.39	CP4-6 prophage dehydratase family protein	3.89E−03	− 26.86
b0875	aqpZ	− 3.05	Aquaporin Z	4.12E−03	− 26.74
b3115	tdcD	1.58	Propionate kinase/acetate kinase C anaerobic	4.52E−03	− 26.55
b0089	ftsW	− 1.48	Putative lipid II flippase integral membrane protein FtsZ ring stabilizer	4.60E−03	− 26.51
b1859	znuB	1.00	Zinc ABC transporter permease	4.87E−03	− 26.39
b2832	ygdQ	1.84	UPF0053 family inner membrane protein	4.89E−03	− 26.38

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