Identification and characterization of levulinyl-CoA synthetase from Pseudomonas citronellolis, which differs phylogenetically from LvaE of Pseudomonas putida

Habe, Hiroshi; Koike, Hideaki; Sato, Yuya; Iimura, Yosuke; Hori, Tomoyuki; Kanno, Manabu; Kimura, Nobutada; Kirimura, Kohtaro

doi:10.1186/s13568-019-0853-y

AMB Express

Table 2 Homology of annotated open reading frames in the 11.1-kb DNA region analyzed

From: Identification and characterization of levulinyl-CoA synthetase from Pseudomonas citronellolis, which differs phylogenetically from LvaE of Pseudomonas putida

ORF			Homologous protein
	Length (aa)	Probable function	Protein	Source	Identity (aa %)	Accession no.
PCLA_07f0384	323	Porphobilinogen synthesis	5-Aminolevulinic acid dehydratase	Pseudomonas citronellolis	100	WP_074983815
			5-Aminolevulinic acid dehydratase (hemB)	Pseudomonas putida KT2440	93	PP_2913
PCLA_07r0385^a	548	Organic acid transport	Cation/acetate symporter (ActP)	Pseudomonas citronellolis	99	WP_074983813
			Acetate permease (ActP-II)	Pseudomonas putida KT2440	64	PP_2797 (LvaG)
PCLA_07r0386^a	72	Unknown	DFU485 domain-containing protein	Pseudomonas citronellolis	100	WP_074983811
			Hypothetical protein	Pseudomonas putida KT2440	31	PP_2796 (LvaF)
PCLA_07r0387^a	531	Levulinyl-CoA synthetase	Long-chain fatty acid-CoA ligase	Pseudomonas citronellolis	99	WP_074983808
			Medium-chain fatty acid-CoA ligase	Pseudomonas putida KT2440	39 35	PP_0763, PP_2795 (LvaE)
PCLA_07r0389^a	624	Levulinate catabolism operon regulator	Propionate catabolism operon regulatory protein (PrpR)	Pseudomonas citronellolis	100	WP_083426835
			sigma54-dependent sensory box protein	Pseudomonas putida KT2440	52	PP_2790 (LvaR)
PCLA_07f0390	352	Phosphotransferase family protein	Phosphotransferase family protein	Pseudomonas citronellolis	100	WP_074983804
			Aminoglycoside phospho transferase	Pseudomonas putida KT2440	59	PP_2791 (LvaA)
PCLA_07f0393	218	Phosphatase family protein	Histidine phosphatase family protein	Pseudomonas citronellolis	99	WP_074983800
			Alpha-ribazole-5′-phosphate phosphatase	Pseudomonas putida KT2440	32	PP_1680
PCLA_07f0394	301	Acyl-CoA dehydrogenase	Acyl-CoA dehydrogenase	Pseudomonas citronellolis	100	WP_074983798
			Acyl-CoA dehydrogenase	Pseudomonas putida KT2440	78	PP_2793 (LvaC)
PCLA_07f0396	255	Short-chain dehydrogenase reductase (SDR)	SDR family NAD(P)-dependent oxidoreductase	Pseudomonas citronellolis	100	WP_074983796
			SDR family oxidoreductase	Pseudomonas putida KT2440	67	PP_2794 (LvaD)

^aORFs are encoded in the complementary strand

Back to article page