Skip to main content

Advertisement

Table 1 Genomic features and GABA yields of the lactobacilli strains used in this study

From: Genomic insights into a robust gamma-aminobutyric acid-producer Lactobacillus brevis CD0817

Lactobacilli strains Size (Mb) GC content (%) No. of protein-coding gene No. of plasmid GenBank/RefSeq accession number GABA yield (g/L) References
L. brevis CD0817 3.10 50.35 2990 4 CP032931.1 252 This study
L. brevis ATCC 367 2.34 46.04 2180 2 NC_008497.1 NA Makarova et al. (2006)
L. brevis KB290 2.59 45.57 2457 9 NC_020819.1 NA Fukao et al. (2013)
L. brevis NPS-QW-145 2.55 45.80 2391 0 NZ_CP015398.1 25.83 Wu et al. (2015)
L. brevis TMW 1.2112 2.67 45.72 2338 5 NZ_CP016797.1 NA Fraunhofer et al. (2018)
L. brevis TMW 1.2113 2.67 45.70 2321 4 NZ_CP019750.1 NA NA
L. brevis TMW 1.2108 2.92 45.27 2738 8 NZ_CP019734.1 NA NA
L. brevis TMW 1.2111 2.88 45.31 2508 6 NZ_CP019743.1 NA NA
L. brevis 100D8 2.48 45.75 2355 3 NZ_CP015338.1 NA NA
L. brevis SRCM101174 2.57 45.59 2474 5 NZ_CP021478.1 NA NA
L. brevis SRCM101106 2.55 45.60 2421 4 NZ_CP021672.1 NA NA
L. brevis BDGP6 2.79 45.60 2679 0 NZ_CP024635.1 NA NA
L. brevis ZLB004 2.66 45.61 2420 5 NZ_CP021456.1 NA NA
L. brevis LMT1-73 2.53 45.89 2347 2 NZ_CP033885.1 NA NA
L. brevis NCTC13768 2.49 46.00 2356 0 NZ_LS483405.1 NA NA
L. brevis BSO 464 2.72 45.46 2606 8 CP005977.1 NA Bergsveinson et al. (2015)
L. brevis CGMCC 1306 NA NA NA NA NA 76.36 Fan et al. (2012)
L. brevis HYE1 NA NA NA NA NA 1.93 Lim et al. (2017)
L. brevis 877G NA NA NA NA NA 1.91 Seo et al. (2013)
L. brevis IFO 12005 NA NA NA NA NA 1.05 Yokoyama et al. (2002)
L. brevis OPK-3 NA NA NA NA NA 2.02 Park and Oh (2007)
L. paracasei NFRI 7415 NA NA NA NA NA 31.14 Komatsuzaki et al. (2008)
L. plantrarum WCFS1 3.35 44.45 3063 3 NC_004567.2 NA Kleerebezem et al. (2003)
L. paraplantarum L-ZS9 3.14 44.00 2835 0 NZ_CP013130.1 NA Liu and Li (2016)
L. reuteri TD1 2.15 38.80 1890 0 NC_021872.1 NA Leonard et al. (2014)
L. fermentum F-6 2.06 51.70 1874 0 NC_021235.1 NA Sun et al. (2015b)
L. buchneri NRRL B-30929 2.59 44.21 2368 3 NC_015420.1 NA Liu et al. (2011)
L. oris J-1 3.24 51.36 2868 2 CP014787.1 NA NA
  1. NA: not available; the CD0817 and 15 completely sequenced Lactobacillus brevis strains were selected for comparative genomics analysis; all lactobacilli strains listed in the table were selected for GAD analysis