Locus taq | Gene symbol | Product | Strand | CaAc RPKM | NaAc RPKM | CaAc/NaAc |
---|---|---|---|---|---|---|
Genes upregulated by high Ca2+ | ||||||
 Branched chain amino acid synthesis | ||||||
  LBYS11_13585 |  | Acetolactate synthase small subunit | − | 144.04 | 14 | 10.29 |
  LBYS11_13570 | leuB | 3-Isopropylmalate dehydrogenase | − | 124.41 | 12.67 | 9.82 |
  LBYS11_13580 |  | Ketol-acid reductoisomerase | − | 263.2 | 27.42 | 9.6 |
  LBYS11_13560 | leuD | 3-Isopropylmalate dehydratase small subunit | − | 116.42 | 12.75 | 9.13 |
  LBYS11_13565 | leuC | 3-Isopropylmalate dehydratase large subunit | − | 144.46 | 17.55 | 8.23 |
  LBYS11_13575 |  | 2-Isopropylmalate synthase | − | 165.84 | 20.78 | 7.98 |
  LBYS11_13590 | ilvB | Acetolactate synthase large subunit IlvB1 | − | 131.49 | 18.13 | 7.25 |
  LBYS11_13595 | ilvD | Dihydroxy-acid dehydratase | − | 223.6 | 41.14 | 5.44 |
 Branched chain fatty acid synthesis | ||||||
  LBYS11_00205 |  | Hypothetical protein (NCBI blast: 3-oxoacyl-(Acyl-carrier-protein (ACP)) synthase III) | + | 1150.45 | 113.55 | 10.13 |
  LBYS11_00220 |  | Phosphopantetheine-binding protein | + | 1044.75 | 125.49 | 8.33 |
  LBYS11_00200 |  | Hypothetical protein: holo-[acyl-carrier-protein] synthase | + | 956.13 | 115.3 | 8.29 |
  LBYS11_00230 |  | Hypothetical protein: holo-[acyl-carrier-protein] synthase | + | 1028.85 | 125.53 | 8.2 |
 Lysine synthesis | ||||||
  LBYS11_00215 | lysA | Diaminopimelate decarboxylase | + | 1089.26 | 118.57 | 9.19 |
 Might serve as radioprotective agent | ||||||
  LBYS11_06125 |  | Glutathionylspermidine synthase | + | 315.38 | 82.76 | 3.81 |
 Protease involved genes | ||||||
  LBYS11_00265 |  | Uncharacterized zinc protease YmfH | + | 754.93 | 96.72 | 7.81 |
  LBYS11_00260 |  | Zinc protease | + | 685.49 | 90.94 | 7.54 |
  LBYS11_06700 |  | n|Uncharacterized protein YuaG | + | 560.04 | 124.56 | 4.5 |
  LBYS11_16935 | hflK | FtsH protease activity modulator HflK|Protein HflK | − | 605.83 | 146.1 | 4.15 |
  LBYS11_16930 | hflC | Protease modulator HflC|Protein HflC | − | 887.2 | 231.43 | 3.83 |
  LBYS11_17070 | sppA | Signal peptide peptidase SppA|Putative signal peptide peptidase SppA | − | 139.57 | 36.6 | 3.81 |
 Multidrug efflux pump and swarming motility involved genes | ||||||
  LBYS11_00190 |  | Multidrug export protein AcrF Cobalt-zinc-cadmium resistance protein CzcA | + | 336.58 | 42.35 | 7.95 |
  LBYS11_00195 |  | Swarming motility protein SwrC | + | 800.18 | 106.83 | 7.49 |
  LBYS11_00255 |  | Hypothetical protein Multi antimicrobial extrusion protein (Na(+)/drug antiporter) | + | 376.26 | 51.85 | 7.26 |
  LBYS11_00250 |  | Hypothetical protein Multi antimicrobial extrusion protein (Na(+)/drug antiporter) | + | 265.05 | 37.79 | 7.01 |
 TCA cycle involved genes | ||||||
  LBYS11_00240 |  | Acyl-CoA dehydrogenase | + | 1676.26 | 217.77 | 7.7 |
  LBYS11_07645 |  | NADP-specific glutamate dehydrogenase | − | 453.98 | 112.24 | 4.04 |
 Hydantoinase | ||||||
  LBYS11_08510 |  | N-methyl hydantoinase | + | 162.46 | 21.19 | 7.67 |
  LBYS11_08515 |  | Hydantoinase subunit beta | + | 225.3 | 32.87 | 6.85 |
 Membrane proteins | ||||||
  LBYS11_13515 |  | Uncharacterized membrane protein YceF | + | 664.23 | 68.7 | 9.67 |
  LBYS11_06695 |  | Uncharacterized membrane protein YuaF | + | 432.69 | 89.78 | 4.82 |
  LBYS11_17065 |  | RDD family protein|Uncharacterized membrane protein YteJ | − | 362.02 | 93.05 | 3.89 |
  LBYS11_20665 |  | Hypothetical protein|UPF0699 transmembrane protein YdbS | − | 148.94 | 39.48 | 3.77 |
 Hypothetical proteins | ||||||
  LBYS11_00210 |  | Hypothetical protein | + | 1190.22 | 124.33 | 9.57 |
  LBYS11_00225 |  | Hypothetical protein | + | 1021.86 | 116.54 | 8.77 |
  LBYS11_00235 |  | Hypothetical protein | + | 1193.34 | 140.21 | 8.51 |
  LBYS11_00245 |  | Hypothetical protein | + | 1002.8 | 129.52 | 7.74 |
  LBYS11_09000 |  | Hypothetical protein | + | 232.67 | 38.56 | 6.03 |
  LBYS11_09005 |  | Hypothetical protein | + | 186.62 | 33.96 | 5.5 |
  LBYS11_09815 |  | Hypothetical protein | + | 153.15 | 32.91 | 4.65 |
  LBYS11_21200 |  | Hypothetical protein | − | 143.8 | 32.67 | 4.4 |
  LBYS11_19760 |  | Hypothetical protein|Uncharacterized protein YvlA | + | 133.72 | 33.88 | 3.95 |
  LBYS11_06120 |  | Hypothetical protein|Uncharacterized serine-rich protein C21513 | + | 413.46 | 112.58 | 3.67 |
Genes downregulated by high Ca2+ | ||||||
 LBYS11_19235 |  | Copper amine oxidase | − | 63.11 | 224.53 | .28 |
 LBYS11_08750 |  | Copper amine oxidase | + | 52.07 | 239.12 | .22 |
 LBYS11_20870 |  | Zinc transporter ZupT | − | 133.27 | 521.26 | .26 |
 LBYS11_01430 |  | Divalent metal cation transporter | − | 8.88 | 211.74 | .04 |
 LBYS11_20140 |  | Guanine/hypoxanthine permease | − | 9.31 | 157.38 | .06 |