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Table 3 Genes involved in production of ammonia and deamination of amino acids

From: Enhanced calcium carbonate-biofilm complex formation by alkali-generating Lysinibacillus boronitolerans YS11 and alkaliphilic Bacillus sp. AK13

Coordinates Strand Product Gene name
266,921–268,435 + Histidine ammonia-lyase hutH
318,892–320,310 Putative amidase AmiD  
435,365–436,537 + Lysine 6-dehydrogenase  
535,842–537104 Phenylserine dehydratase  
1,039,715–1,040,377 + Probable l-serine dehydratase, beta chain sdaAB
1,040,392–1,041,300 + Probable l-serine dehydratase, alpha chain sdaAA
1,101,650–1,102,153 + Probable chemoreceptor glutamine deamidase CheD 1  
1,318,421–1,319,788 Guanine deaminase guaD
1,430,688–1,431,656 l-Asparaginase  
1,547,319–1,548,554 + Allantoate deiminase  
1,581,552–1,582,922 + Ethanolamine ammonia-lyase heavy chain  
1,582,932–1,583,942 + Ethanolamine ammonia-lyase light chain  
1,614,306–1,615,679 NADP-specific glutamate dehydrogenase  
1,616,318–1,617,646 + Probable d-serine dehydratase  
1,804,351–1,805,055 + Glucosamine-6-phosphate deaminase  
1852010–1852543 + Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB  
2,097,252–2,098,670 + Aspartate ammonia-lyase aspA
2,100,543–2,100,845 + Urease subunit gamma ureA
2,100,861–2,101,229 + Urease subunit beta  
2,101,226–2,102,941 + Urease subunit alpha ureC
2,423,272–2,424,252 Meso-diaminopimelate d-dehydrogenase  
2,687,063–2,688,808 Adenine deaminase ade
2,743,214–2,744,329 + Cystathionine beta-lyase MetC  
2,850,380–2,851,474 Leucine dehydrogenase  
2,897,281–2,898,246 Glutaminase 1 glsA
2,913,990–2,915,093 Aminomethyltransferase gcvT
3,177,391–3,178,323 Porphobilinogen deaminase  
3,406,895–3,408,010 Alanine dehydrogenase ald
3,539,367–3,540,581 Diaminopropionate ammonia-lyase  
3,564,845–3,566,089 Catabolic NAD-specific glutamate dehydrogenase RocG  
3,575,261–3,576,433 + Cystathionine beta-lyase PatB  
3,688,923–3,690,383 Putative amidase AmiC  
3,856,477–3,857,190 Glucosamine-6-phosphate deaminase nagB
3,991,464–3,993,185 Putative adenine deaminase PTO1085  
4,002,226–4,002,909 Phosphoribosylformylglycinamidine synthase subunit PurQ