TY - JOUR AU - Ahmad, R. AU - Amirtharajah, A. PY - 1998 DA - 1998// TI - Detachment of particles during bio-filter backwashing JO - J AWWA VL - 90 UR - https://doi.org/10.1002/j.1551-8833.1998.tb08553.x DO - 10.1002/j.1551-8833.1998.tb08553.x ID - Ahmad1998 ER - TY - JOUR AU - Altschul, S. F. AU - Madden, T. L. AU - Schaffer, A. A. AU - Zhang, J. AU - Zhang, Z. AU - Miller, W. AU - Lipman, D. J. PY - 1997 DA - 1997// TI - Gapped BLAST and PSI-BLAST: a new generation of protein database search programs JO - J Nucleic Acids Res VL - 25 UR - https://doi.org/10.1093/nar/25.17.3389 DO - 10.1093/nar/25.17.3389 ID - Altschul1997 ER - TY - BOOK PY - 1988 DA - 1988// TI - Standard methods for the examination of water and wastewater PB - American Public Health Association Washington CY - DC ID - ref3 ER - TY - JOUR AU - Avrahami, S. AU - Liesack, W. AU - Conrad, R. PY - 2003 DA - 2003// TI - Effects of temperature and fertilizer on activity and community structure of soil ammonia oxidizers JO - J Environ Microbiol VL - 5 UR - https://doi.org/10.1046/j.1462-2920.2003.00457.x DO - 10.1046/j.1462-2920.2003.00457.x ID - Avrahami2003 ER - TY - JOUR AU - Bartlett, K. B. AU - Harriss, R. C. AU - Sebacher, D. I. PY - 1985 DA - 1985// TI - Methane flux from coastal salt marshes JO - J Geophys Res VL - 90 UR - https://doi.org/10.1029/JD090iD03p05710 DO - 10.1029/JD090iD03p05710 ID - Bartlett1985 ER - TY - STD TI - Bio-Rad Nanjing New Campus Biotechnology Institute, China (2008) Nanjing New campus patent protocol (patent no: 200830037521: X or 200820037544.5); 1st August 2008 ID - ref6 ER - TY - JOUR AU - Boon, N. AU - Windt, W. AU - Verstraete, W. AU - Top, E. M. PY - 2001 DA - 2001// TI - Evaluation of nested PCR-DGGE (denaturing gradient gel electrophoresis) with group-specific 16S rRNA primers for the analysis of bacterial communities from different waste water treatment plants JO - FEMS J Microbiol Ecol VL - 39 ID - Boon2001 ER - TY - JOUR AU - Bouwer, E. J. AU - Crowe, P. B. PY - 1988 DA - 1988// TI - Biological processes in drinking water treatment JO - J AWWA VL - 80 UR - https://doi.org/10.1002/j.1551-8833.1988.tb03103.x DO - 10.1002/j.1551-8833.1988.tb03103.x ID - Bouwer1988 ER - TY - JOUR AU - Brandes, J. A. AU - Devol, A. H. AU - Deutsch, C. PY - 2007 DA - 2007// TI - New developments in the marine nitrogen cycle JO - J Chem Rev VL - 107 UR - https://doi.org/10.1021/cr050377t DO - 10.1021/cr050377t ID - Brandes2007 ER - TY - JOUR AU - Brown, M. N. AU - Briones, A. AU - James, D. AU - Lutgarde, R. PY - 2013 DA - 2013// TI - Ammonia-oxidizing archaea and nitrite-oxidizing nitrospiras in the bio-filter of a shrimp re-circulating aquaculture system JO - FEMS Microbiol Ecol VL - 83 UR - https://doi.org/10.1111/j.1574-6941.2012.01448.x DO - 10.1111/j.1574-6941.2012.01448.x ID - Brown2013 ER - TY - STD TI - Burg van den SWK, Taal C, de Boer IJM, Bakker T., Viets TC (2012) Environmental performance of wild-caught North Sea whitefish, a comparison with aquaculture and animal husbandry using LCA. LEI, Den Haag Report no. 2011-090 ID - ref11 ER - TY - JOUR AU - Cardona, E. AU - Gueguen, Y. AU - Magré, K. AU - Lorgeoux, B. AU - Piquemal, D. AU - Pierrat, F. AU - Noguier, F. AU - Saulnier, D. PY - 2016 DA - 2016// TI - Bacterial community characterization of water and intestine of the shrimp Litopenaeus stylirostris in a biofloc system JO - J BMC Microbiol VL - 16 UR - https://doi.org/10.1186/s12866-015-0617-z DO - 10.1186/s12866-015-0617-z ID - Cardona2016 ER - TY - JOUR AU - Carlson, K. H. AU - Amy, G. L. PY - 1998 DA - 1998// TI - BOM removal during bio-filtration JO - J AWWA VL - 90 UR - https://doi.org/10.1002/j.1551-8833.1998.tb08550.x DO - 10.1002/j.1551-8833.1998.tb08550.x ID - Carlson1998 ER - TY - JOUR AU - Chanika, E. AU - Georgiadou, D. AU - Soueref, E. AU - Karas, P. AU - Karanasios, E. AU - Tsiropoulos, N. G. AU - Tzortzakakis, E. A. AU - Karpouzas, D. G. PY - 2011 DA - 2011// TI - Isolation of soil bacteria able to hydrolyze both organophosphate and carbamate pesticides JO - J Bioresour Technol VL - 102 UR - https://doi.org/10.1016/j.biortech.2010.10.145 DO - 10.1016/j.biortech.2010.10.145 ID - Chanika2011 ER - TY - JOUR AU - Chaudhary, D. S. AU - Vigneswaran, S. AU - Ngo, H. H. AU - Shim, W. G. AU - Moon, H. PY - 2003 DA - 2003// TI - Bio-filter in water and wastewater treatment JO - Korean J Chem Eng VL - 20 UR - https://doi.org/10.1007/BF02706936 DO - 10.1007/BF02706936 ID - Chaudhary2003 ER - TY - JOUR AU - Coci, M. AU - Garnier, J. AU - Laanbroek, H. J. PY - 2004 DA - 2004// TI - Denaturing gradient gel electrophoretic analysis of ammonia-oxidizing bacterial community structure in the lower Seine River: impact of Paris wastewater effluents JO - Appl Environ Microbiol VL - 70 UR - https://doi.org/10.1128/AEM.70.11.6726-6737.2004 DO - 10.1128/AEM.70.11.6726-6737.2004 ID - Coci2004 ER - TY - JOUR AU - Crab, R. AU - Avnimelech, Y. AU - Defoirdt, T. AU - Bossier, P. AU - Verstraete, W. PY - 2007 DA - 2007// TI - Nitrogen removal techniques in aquaculture for sustainable production JO - J Aquacult VL - 270 UR - https://doi.org/10.1016/j.aquaculture.2007.05.006 DO - 10.1016/j.aquaculture.2007.05.006 ID - Crab2007 ER - TY - JOUR AU - Dar, S. A. AU - Kuenen, J. G. AU - Muyzer, G. PY - 2005 DA - 2005// TI - Nested PCR - denaturing gradient gel electrophoresis approach to determine the diversity of sulfate-reducing bacteria in complex microbial communities JO - J Appl Environ Microbiol VL - 71 UR - https://doi.org/10.1128/AEM.71.5.2325-2330.2005 DO - 10.1128/AEM.71.5.2325-2330.2005 ID - Dar2005 ER - TY - JOUR AU - Deng, M. AU - Chen, J. Y. AU - Gou, J. W. AU - Hou, J. AU - Li, D. P. AU - He, X. G. PY - 2018 DA - 2018// TI - The effects of different carbon sources on water quality, microbial community and structure of biofloc systems JO - J Aquacult VL - 482 UR - https://doi.org/10.1016/j.aquaculture.2017.09.030 DO - 10.1016/j.aquaculture.2017.09.030 ID - Deng2018 ER - TY - JOUR AU - Egli, K. AU - Fanger, U. AU - Alvarez, P. J. AU - Siegrist, H. AU - Meer, J. R. AU - Zehnder, A. J. PY - 2001 DA - 2001// TI - Enrichment and characterization of an anammox bacterium from a rotating biological contactor treating ammonium-rich leachate JO - J Arch Microbiol VL - 175 UR - https://doi.org/10.1007/s002030100255 DO - 10.1007/s002030100255 ID - Egli2001 ER - TY - JOUR AU - Fan, L. M. AU - Kamira, B. AU - Shi, L. L. AU - Song, C. AU - Meng, S. L. AU - Qiu, L. P. AU - Hu, G. D. AU - Zheng, Y. AU - Li, F. J. AU - Chen, J. Z. AU - Pao, X. PY - 2018 DA - 2018// TI - Archaeal community compositions in tilapia pond systems and their influencing factors JO - World Microbiol Biotechnol UR - https://doi.org/10.1007/s11274-018-2412-0) DO - 10.1007/s11274-018-2412-0) ID - Fan2018 ER - TY - JOUR AU - Hanson, R. S. PY - 1980 DA - 1980// TI - Ecology and diversity of methylotrophic organisms JO - J Adv Appl Microbiol VL - 26 UR - https://doi.org/10.1016/S0065-2164(08)70328-9 DO - 10.1016/S0065-2164(08)70328-9 ID - Hanson1980 ER - TY - JOUR AU - Hargreaves, J. A. PY - 1998 DA - 1998// TI - Nitrogen biogeochemistry of aquaculture ponds JO - J Aquacult VL - 166 UR - https://doi.org/10.1016/S0044-8486(98)00298-1 DO - 10.1016/S0044-8486(98)00298-1 ID - Hargreaves1998 ER - TY - JOUR AU - Harriss, R. C. AU - Sebacher, D. I. AU - Day, F. P. PY - 1982 DA - 1982// TI - Methane flux in the Great Dismal Swamp JO - J Nat VL - 297 UR - https://doi.org/10.1038/297673a0 DO - 10.1038/297673a0 ID - Harriss1982 ER - TY - JOUR AU - Heng, R. AU - Schmidt, L. C. AU - Bonin, J. AU - Robert, M. PY - 2017 DA - 2017// TI - Visible-light-driven methane formation from CO2 with a molecular iron catalyst JO - Nature VL - 548 UR - https://doi.org/10.1038/548038b DO - 10.1038/548038b ID - Heng2017 ER - TY - JOUR AU - Hilyard, E. J. AU - Jones-Mehaan, J. M. AU - Spargo, J. B. AU - Hill, R. T. PY - 2008 DA - 2008// TI - Enrichment, isolation and phylogenetic identification of polycyclic aromatic hydrocarbon-degrading bacteria from Elizabeth River sediments JO - J Appl Environ Microbiol VL - 74 UR - https://doi.org/10.1128/AEM.01518-07 DO - 10.1128/AEM.01518-07 ID - Hilyard2008 ER - TY - JOUR AU - Huang, Z. T. AU - Jiang, Y. L. AU - Song, X. F. AU - Hallerman, E. AU - Peng, L. AU - Dong, D. P. AU - Ma, T. AU - Zhai, J. M. AU - Li, W. S. PY - 2018 DA - 2018// TI - Ammonia oxidizing bacteria and archaea within bio-filters of a commercial re-circulating marine aquaculture system JO - AMB Expr UR - https://doi.org/10.1186/s13568-018-0551-1 DO - 10.1186/s13568-018-0551-1 ID - Huang2018 ER - TY - JOUR AU - Hui, J. AU - Lu, K. C. AU - Stensel, D. PY - 2014 DA - 2014// TI - Microbial ecology of denitrification in biological wastewater treatment JO - J Water Res VL - 64 UR - https://doi.org/10.1016/j.watres.2014.06.042 DO - 10.1016/j.watres.2014.06.042 ID - Hui2014 ER - TY - JOUR AU - Ibekwe, A. M. AU - Lyon, S. R. AU - Leddy, M. AU - Jacobson-Meyers, M. PY - 2007 DA - 2007// TI - Impact of plant density and microbial composition on water quality from a free water surface constructed wetland JO - J Appl Microbiol VL - 102 ID - Ibekwe2007 ER - TY - JOUR AU - Itoi, S. AU - Ebihara, N. AU - Washio, S. AU - Sugita, H. PY - 2007 DA - 2007// TI - Nitrite-oxidizing bacteria, Nitrospira, distribution in the outer layer of the bio-film from filter materials of a re-circulating water system for the goldfish (Carassius auratus) JO - J Aquacult VL - 264 UR - https://doi.org/10.1016/j.aquaculture.2007.01.007 DO - 10.1016/j.aquaculture.2007.01.007 ID - Itoi2007 ER - TY - JOUR AU - Jetten, M. S. M. AU - Wagner, M. AU - Fuerst, J. AU - Loosdrecht, M. AU - Kuenen, G. AU - Strous, M. PY - 2001 DA - 2001// TI - Microbiology and application of the anaerobic ammonium oxidation (‘anammox’) process JO - Curr Opin Biotechnol VL - 12 UR - https://doi.org/10.1016/S0958-1669(00)00211-1 DO - 10.1016/S0958-1669(00)00211-1 ID - Jetten2001 ER - TY - JOUR AU - Juretschko, S. AU - Timmermann, G. AU - Schmid, M. AU - Schleifer, K. H. AU - Pommerening-Roser, A. AU - Koops, H. P. AU - Wagner, M. PY - 1998 DA - 1998// TI - Combined molecular and conventional analysis of nitrifying bacterium diversity in activated sludge: Nitrosococcus mobilis and Nitrospira-like bacteria as dominant populations JO - J Appl Environ Microbiol VL - 64 ID - Juretschko1998 ER - TY - JOUR AU - Karl, D. M. AU - Beversdorf, L. AU - Björkman, K. M. AU - Church, M. J. AU - Delong, E. F. AU - Martinez, A. PY - 2008 DA - 2008// TI - Aerobic production of methane in the sea JO - Nat Geosci VL - 1 UR - https://doi.org/10.1038/ngeo234 DO - 10.1038/ngeo234 ID - Karl2008 ER - TY - JOUR AU - Keppler, F. AU - Hamilton, J. T. G. AU - Braß, M. AU - Röckmann, T. PY - 2006 DA - 2006// TI - Methane emissions from terrestrial plants under aerobic conditions JO - Nature VL - 439 UR - https://doi.org/10.1038/nature04420 DO - 10.1038/nature04420 ID - Keppler2006 ER - TY - STD TI - Kersters K, de Vos P, Gillis M, Swings J, Vandamme P, Stackebrandt E (2006) Introduction to the Proteobacteria. The Prokaryotes; a handbook on the biology of bacteria In: Proteobacteria: alpha and beta subclasses. 5. 3–37. Springer Science + Business Media, Inc. 233 Spring Street; New York, NY 10013, USA ISBN-13:978-0387-25476-0 ID - ref35 ER - TY - JOUR AU - Konneke, M. AU - Bernhard, A. E. AU - Torre, J. R. AU - Walker, C. B. AU - Waterbury, J. B. AU - Stahl, D. A. PY - 2005 DA - 2005// TI - Isolation of an autotrophic ammonia-oxidizing marine archaeon JO - Nature VL - 437 UR - https://doi.org/10.1038/nature03911 DO - 10.1038/nature03911 ID - Konneke2005 ER - TY - JOUR AU - Kowalchuk, G. A. AU - Stephen, J. R. AU - Boer, W. AU - Prossser, J. I. AU - Embley, T. M. AU - Woldendorp, J. W. PY - 1997 DA - 1997// TI - Analysis of the ammonia oxidizing bacteria in the beta subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR – amplified 16S ribosomal DNA fragments JO - J Appl Environ Microbiol VL - 63 ID - Kowalchuk1997 ER - TY - STD TI - Kumar S, Stecher G, Tamura K (2016) MEGA7: Molecular evolutionary genetics analysis version 7.0 for bigger datasets. J Mol Biol Evol Oxford university press, http://mbe.oxfordjournals.org UR - http://mbe.oxfordjournals.org ID - ref38 ER - TY - JOUR AU - Kuypers, M. M. AU - Sliekers, A. O. AU - Lavik, G. AU - Schmid, M. AU - Jorgensen, B. B. AU - Kuenen, J. G. AU - SinningheDamste, J. S. AU - Strous, M. AU - Jetten, M. S. M. PY - 2003 DA - 2003// TI - Anaerobic ammonium oxidation by anammox bacteria in the Black Sea JO - Nature VL - 422 UR - https://doi.org/10.1038/nature01472 DO - 10.1038/nature01472 ID - Kuypers2003 ER - TY - JOUR AU - Lahav, O. AU - Bar, M. I. AU - Yackoubov, D. AU - Zelikson, R. AU - Mozes, N. AU - Tal, Y. AU - Tarre, S. PY - 2009 DA - 2009// TI - Quantification of anammox activity in a denitrification reactor for a re-circulating aquaculture system JO - Aquaculture VL - 288 UR - https://doi.org/10.1016/j.aquaculture.2008.11.020 DO - 10.1016/j.aquaculture.2008.11.020 ID - Lahav2009 ER - TY - JOUR AU - Lam, P. AU - Lavik, G. AU - Jensen, M. M. AU - Vossenberg, J. AU - Schmid, M. AU - Woebken, D. AU - Gutiérrez, D. AU - Amann, R. AU - Jetten, M. S. M. AU - Kuypers, M. M. M. PY - 2009 DA - 2009// TI - Revising the nitrogen cycle in the Peruvian oxygen minimum zone Proc JO - Nat Acad Sci USA VL - 106 UR - https://doi.org/10.1073/pnas.0812444106 DO - 10.1073/pnas.0812444106 ID - Lam2009 ER - TY - JOUR AU - Liu, M. AU - Xiao, T. AU - Wu, Y. AU - Zhou, F. AU - Huang, H. AU - Bao, S. AU - Zhang, W. PY - 2012 DA - 2012// TI - Temporal distribution of bacterial community structure in the Changjiang Estuary hypoxia area and the adjacent East China Sea JO - J Environ Res Lett VL - 7 UR - https://doi.org/10.1088/1748-9326/7/2/025001 DO - 10.1088/1748-9326/7/2/025001 ID - Liu2012 ER - TY - STD TI - Mascha R, Poelman M, Smith S, van Hoof L (2013) GHG Emissions in aquatic production systems and marine fisheries IMARES, part of Wageningen UR, 13.IMA0525.MR.jd ID - ref43 ER - TY - JOUR AU - Metcalf, W. W. AU - Griffin, B. M. AU - Cicchillo, R. M. AU - Gao, J. T. AU - Janga, S. C. AU - Cooke, H. A. AU - Circello, B. T. AU - Evans, B. S. AU - Martens-Habbena, W. AU - Stahl, D. A. AU - Donk, W. A. PY - 2012 DA - 2012// TI - Synthesis of methylphosphonic acid by marine microbes: a source for methane in the aerobic ocean JO - Science VL - 337 UR - https://doi.org/10.1126/science.1219875 DO - 10.1126/science.1219875 ID - Metcalf2012 ER - TY - JOUR AU - Muyzer, G. AU - Waal, E. C. AU - Uitierlinden, A. G. PY - 1993 DA - 1993// TI - Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplification genes coding for 16S rRNA JO - Appl Environ Microbiol VL - 59 ID - Muyzer1993 ER - TY - JOUR AU - Pelletier, N. AU - Tyedmers, P. PY - 2007 DA - 2007// TI - Feeding farmed salmon: is organic better? JO - Aquaculture VL - 272 UR - https://doi.org/10.1016/j.aquaculture.2007.06.024 DO - 10.1016/j.aquaculture.2007.06.024 ID - Pelletier2007 ER - TY - JOUR AU - Pelletier, N. AU - Tyedmers, P. PY - 2010 DA - 2010// TI - Life cycle assessment of frozen tilapia fillets from Indonesian lake-based and pond-based intensive aquaculture systems JO - J Ind Ecol VL - 14 UR - https://doi.org/10.1111/j.1530-9290.2010.00244.x DO - 10.1111/j.1530-9290.2010.00244.x ID - Pelletier2010 ER - TY - JOUR AU - Purkhold, U. AU - Pommerening-Roser, A. AU - Juretschko, S. AU - Schmid, M. C. AU - Koops, H. P. AU - Wagner, M. PY - 2000 DA - 2000// TI - Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and AmoA sequence analysis: implications for molecular diversity surveys JO - Appl Environ Microbiol VL - 66 UR - https://doi.org/10.1128/AEM.66.12.5368-5382.2000 DO - 10.1128/AEM.66.12.5368-5382.2000 ID - Purkhold2000 ER - TY - JOUR AU - Rijn, J. PY - 1996 DA - 1996// TI - The potential of integrated biological treatment systems in re-circulating fish culture—a review JO - J Aquacult VL - 139 UR - https://doi.org/10.1016/0044-8486(95)01151-X DO - 10.1016/0044-8486(95)01151-X ID - Rijn1996 ER - TY - JOUR AU - Rudd, J. W. M. AU - Hamilton, R. D. PY - 1975 DA - 1975// TI - Factors controlling rates of methane oxidation and the distribution of the methane oxidizers in a small stratified lake JO - J Arch Microbiol VL - 75 ID - Rudd1975 ER - TY - JOUR AU - Saitou, N. AU - Nei, M. PY - 1987 DA - 1987// TI - The neighbor-joining method A new method for reconstructing phylogenetic trees JO - Mol Biol Evol VL - 4 ID - Saitou1987 ER - TY - JOUR AU - Sansone, F. J. AU - Martens, C. S. PY - 1981 DA - 1981// TI - Methane production from acetate and associated fluxes from anoxic coastal sediments JO - J Sci VL - 211 UR - https://doi.org/10.1126/science.211.4483.707 DO - 10.1126/science.211.4483.707 ID - Sansone1981 ER - TY - STD TI - Saucier B, Chen S, Zhu S (2000) Nitrification potential and oxygen limitation in bio-filters Third International Conference on Re-circulating Aquaculture, Roanoke, VA, USA July 2000 ID - ref53 ER - TY - JOUR AU - Sauder, L. A. AU - Engel, K. AU - Stearns, J. C. AU - Masella, A. P. AU - Pawliszyn, R. AU - Neufeld, J. D. PY - 2011 DA - 2011// TI - Aquarium nitrification revisited: thaumarchaeota are the dominant ammonia oxidizers in freshwater aquarium bio-filters JO - PLoS ONE UR - https://doi.org/10.1371/journal.pone.0023281 DO - 10.1371/journal.pone.0023281 ID - Sauder2011 ER - TY - JOUR AU - Schmid, M. C. AU - Risgaard-Petersen, N. AU - Vossenberg, J. AU - Kuypers, M. M. M. AU - Lavik, G. AU - Petersen, J. AU - Hulth, S. AU - Thamdrup, B. AU - Canfield, D. AU - Dalsgaard, T. AU - Rysgaard, S. AU - Sejr, M. K. AU - Strous, M. AU - Op den Camp, H. J. M. AU - Jetten, M. S. M. PY - 2007 DA - 2007// TI - Anaerobic ammonium-oxidizing bacteria in marine environments: widespread occurrence but low diversity JO - J Environ Microbiol VL - 9 UR - https://doi.org/10.1111/j.1462-2920.2007.01266.x DO - 10.1111/j.1462-2920.2007.01266.x ID - Schmid2007 ER - TY - JOUR AU - Servais, P. AU - Billen, G. AU - Bouillot, P. PY - 1994 DA - 1994// TI - Biological colonization of granular activated carbon filters in drinking-water treatment JO - J Environ Eng VL - 120 UR - https://doi.org/10.1061/(ASCE)0733-9372(1994)120:4(888) DO - 10.1061/(ASCE)0733-9372(1994)120:4(888) ID - Servais1994 ER - TY - JOUR AU - Song, Q. W. AU - Peng, Y. AU - Huang, Z. M. AU - Huang, Z. P. AU - Xu, L. AU - Gelbic, I. AU - Guan, X. AU - Zhang, L. L. AU - Zou, S. Q. PY - 2013 DA - 2013// TI - Isolation and characterization of a novel native Bacillus thuringiensis strain BRC-HZM2 capable of degrading chlorpyrifos JO - J Basic Microbiol VL - 55 UR - https://doi.org/10.1002/jobm.201300501 DO - 10.1002/jobm.201300501 ID - Song2013 ER - TY - JOUR AU - Sower, K. R. AU - Ferry, J. G. PY - 1983 DA - 1983// TI - Isolation and characterization of methylotrophic marine methanogen, Methanococcoide methylutens gen. nov., sp, nov JO - J Appl Environ Microbiol VL - 45 ID - Sower1983 ER - TY - JOUR AU - Tal, Y. AU - Watts, J. E. M. AU - Schreier, S. B. AU - Sowers, K. R. AU - Schreier, H. J. PY - 2003 DA - 2003// TI - Characterization of the microbial community and nitrogen transformation process associated with moving bed bioreactors in a closed re-circulated mariculture system JO - Aquaculture VL - 215 UR - https://doi.org/10.1016/S0044-8486(02)00372-1 DO - 10.1016/S0044-8486(02)00372-1 ID - Tal2003 ER - TY - JOUR AU - Tamura, K. AU - Nei, M. AU - Kumar, S. PY - 2004 DA - 2004// TI - Prospects for inferring very large phylogenies by using the neighbor-joining method JO - Proc Natl Acad Sci USA VL - 101 UR - https://doi.org/10.1073/pnas.0404206101 DO - 10.1073/pnas.0404206101 ID - Tamura2004 ER - TY - JOUR AU - Thamdrup, B. AU - Dalsgaard, T. PY - 2002 DA - 2002// TI - Production of N2 through anaerobic ammonium oxidation coupled to nitrate reduction in marine sediments JO - J Appl Environ Microbiol VL - 68 UR - https://doi.org/10.1128/AEM.68.3.1312-1318.2002 DO - 10.1128/AEM.68.3.1312-1318.2002 ID - Thamdrup2002 ER - TY - JOUR AU - Thompson, J. D. AU - Higgins, D. G. AU - Gibson, T. J. PY - 1994 DA - 1994// TI - CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice JO - J Nucleic Acids Res VL - 22 UR - https://doi.org/10.1093/nar/22.22.4673 DO - 10.1093/nar/22.22.4673 ID - Thompson1994 ER - TY - JOUR AU - Kessel, M. A. AU - Harhangi, H. R. AU - Pas-Schoonen, K. AU - Vossenberg, J. AU - Flik, G. AU - Jetten, M. S. AU - Klaren, P. H. AU - Camp, H. J. PY - 2010 DA - 2010// TI - Biodiversity of N-cycle bacteria in nitrogen removing moving bed bio-filters for freshwater re-circulating aquaculture systems JO - J Aquacult VL - 306 UR - https://doi.org/10.1016/j.aquaculture.2010.05.019 DO - 10.1016/j.aquaculture.2010.05.019 ID - Kessel2010 ER - TY - JOUR AU - Wagner, M. AU - Loy, A. AU - Nogueira, R. AU - Purkhold, U. AU - Lee, N. AU - Daims, H. PY - 2002 DA - 2002// TI - Microbial community composition and function in waste water treatment plants JO - Antonie Van Leeuwenhoek VL - 81 UR - https://doi.org/10.1023/A:1020586312170 DO - 10.1023/A:1020586312170 ID - Wagner2002 ER - TY - JOUR AU - Wang, J. W. AU - Summers, R. C. AU - Miltner, R. J. PY - 1995 DA - 1995// TI - Bio-filtration performance: part 1, relationship to biomass JO - J AWWA VL - 87 UR - https://doi.org/10.1002/j.1551-8833.1995.tb06465.x DO - 10.1002/j.1551-8833.1995.tb06465.x ID - Wang1995 ER - TY - JOUR AU - Ward, B. B. PY - 1987 DA - 1987// TI - Kinetic studies on ammonia and methane oxidation by Nitrosococcus oceanus JO - J Arch Microbiol VL - 147 UR - https://doi.org/10.1007/BF00415273 DO - 10.1007/BF00415273 ID - Ward1987 ER - TY - JOUR AU - Ward, B. B. PY - 2015 DA - 2015// TI - Nitrification, reference module in earth systems and environmental sciences JO - Encyclopedia Ecol VL - 2008 UR - https://doi.org/10.1016/b978-0-12-409548-9.00697-7 DO - 10.1016/b978-0-12-409548-9.00697-7 ID - Ward2015 ER - TY - JOUR AU - Ward, B. B. AU - Voytek, M. A. AU - Witzel, K. P. PY - 1997 DA - 1997// TI - Phylogenetic diversity of natural populations of ammonia oxidizers investigated by specific PCR amplification JO - J Microbiol Ecol VL - 33 UR - https://doi.org/10.1007/s002489900011 DO - 10.1007/s002489900011 ID - Ward1997 ER - TY - JOUR AU - Whittenbury, R. AU - Phillips, K. C. AU - Wilkinson, J. F. PY - 1970 DA - 1970// TI - Enrichment, isolation and some properties of methane-utilizing bacteria JO - J Gen Microbiol VL - 61 UR - https://doi.org/10.1099/00221287-61-2-205 DO - 10.1099/00221287-61-2-205 ID - Whittenbury1970 ER - TY - JOUR AU - Yao, S. AU - Ni, J. R. AU - Chen, Q. AU - Borthwick, A. G. L. PY - 2013 DA - 2013// TI - Enrichment and characterizing of a bacteria consortium capable of heterotrophic nitrification and aerobic denitrification at low temperatures JO - J Bioresour Technol VL - 127 UR - https://doi.org/10.1016/j.biortech.2012.09.098 DO - 10.1016/j.biortech.2012.09.098 ID - Yao2013 ER - TY - JOUR AU - Zhang, D. AU - Li, W. AU - Zhang, S. AU - Liu, M. AU - Gong, H. PY - 2011 DA - 2011// TI - Evaluation of the impact of DNA extraction methods on BAC bacterial community composition measured by denaturing gradient gel electrophoresis JO - Lett Appl Microbiol VL - 53 UR - https://doi.org/10.1111/j.1472-765X.2011.03064.x DO - 10.1111/j.1472-765X.2011.03064.x ID - Zhang2011 ER - TY - JOUR AU - Zhao, X. Y. AU - Zhao, Y. AU - Xi, B. D. AU - Wei, Z. M. AU - Wu, J. Q. PY - 2016 DA - 2016// TI - Seasonal population changes in the ammonia oxidizing bacteria community structure of Songhua Lake, China JO - J Process Saf Environ Protect VL - 104 UR - https://doi.org/10.1016/j.psep.2016.04.020 DO - 10.1016/j.psep.2016.04.020 ID - Zhao2016 ER - TY - JOUR AU - Zhu, S. M. AU - Chen, S. L. PY - 1999 DA - 1999// TI - An experimental study on nitrification bio-films performances using a series reactor system JO - J Aqua Eng VL - 23 UR - https://doi.org/10.1016/S0144-8609(99)00019-9 DO - 10.1016/S0144-8609(99)00019-9 ID - Zhu1999 ER - TY - JOUR AU - Ziembinska, A. AU - Ciesielski, S. AU - Miksch, K. PY - 2009 DA - 2009// TI - Ammonia oxidizing bacteria community in activated sludge monitored by denaturing gradient gel electrophoresis (DGGE) JO - J Gen Appl Microbiol VL - 55 UR - https://doi.org/10.2323/jgam.55.373 DO - 10.2323/jgam.55.373 ID - Ziembinska2009 ER -