Table 2 General features of Bacillus sp. GFP-2 and MIGS mandatory information
Items | Descriptions |
|---|---|
General features | |
Classification | Domain Bacteria |
Phylum Firmicutes | |
Class Firmibacteria | |
Order Bacillales | |
Family Bacillaceae | |
Genus Bacillus | |
Gram strain | Positive |
Cell shape | Rod |
Color of colonies | White |
Temperature | 10–40 °C |
Optimal NaCl concentration | 1% |
Optimal pH | 7.0 |
Observed biotic relationship | Free-living |
MIGS data | |
Investigation type | Bacteria_archaea |
Project name | Genome sequence of Bacillus sp. GFP-2 |
Latitude and longitude | Not reported |
Depth | Not reported |
Geographical location | Not reported |
Collection date | Not reported |
Environment (biome) | Shark intestine |
Number of replicons | 1 |
Estimated size | 3,975,220 bp |
Source material identifiers | GFP-2 = CGMCC 13337 |
Trophic level | Chemoorganotroph |
Relationship to oxygen | Aerobic |
Library reads sequenced | The large smrtbell gdna protocol (Pacific Biosciences, USA) |
Sequencing method | A pacbio RS II platform |
Assembly data | |
Assembly method | De novo assembled using the PacBio hierarchical genome assembly process (HGAP)/Quiver software |
Estimated error rate | 99.99% (average reference consensus) |
Method of calculation | Estimation from HGAP Assembly quality scores |
Assembly name | HGAP Assembly version 2 (Pacific Biosciences, USA) |