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Table 3 Nucleotide accession numbers of the bacterial/archeal genes used in the study

From: Exploring d-xylose oxidation in Saccharomyces cerevisiae through the Weimberg pathway

Gene name

Organism

Accession number

% seq. identity with Cc XylD

GenBank

IMG

GenBank codon-optb

d-Xylose dehydrogenase xylB

C. crescentus

YP_002516237.1

 

MG681087

 

d-Xylonolactonase xylC

C. crescentus

YP_002516236.1

 

MG681088

 

d-Xylonate dehydratase xylD

C. crescentus

YP_002516235

 

MG681089

100

2KD-dehydratase xylX

C. crescentus

YP_002516239.1

 

MG681090

 

AKG semialdehyde dehydrogenase xylA

C. crescentus

YP_002516238.1

 

MG681091

 

d-Xylonate dehydratase yjhG

E. coli

WP_000116326.1

 

MG681092

29.4

d-Xylonate dehydratase xad

H. volcanii

WP_004041116.1

 

MG681093

18.6

d-Xylonate dehydratase

Ellin329 bacta

 

2626539782

MG681094

73.9

Dihydroxy-acid dehydratase

B. cenocepacia H111

 

2533426636

MG681095

62.7

  1. aFull name: Ellin329 bacterium JGI 000192CP-E08
  2. bGenBank accession number for genes codon optimized for Saccharomyces cerevisiae