Generic for 11 Chlamydia species
|
23S rRNA
|
UP1
|
GGGGTTGTAGGRTTGRGGAWAAAGGATC
|
168
|
Guo et al. (2016)
|
UP2
|
GGGGTTGTAGGGTCGATAAYATGRGATC
|
DN
|
GAGAGTGGTCTCCCCAGATTCARACTA
|
FLU1
|
ACGAAAGGAGAKMAAGACYGACCTCAAC-6-FAM
|
FLU2
|
ACGAAAAAACAAGAGACTCTATTCGAT-6-FAM
|
LCRed
|
LCRed640-CCTGAGTAGRRCTAGACACGTGAAAC-P
|
Generic for Mycoplasma species
|
16S rRNA
|
UP
|
CTGCCTGAGTAGTAYRYTCGCAA
|
174
|
This study
|
DN
|
TGCACCATCTGTCACTHBGTTARCCTC
|
FLU
|
AAACCACATGCTCCACCGCTTGT-36-FAM
|
LCRed
|
LCRed640-GGTCCCCGTCAATTCCTTTAAGTTT-P
|
Mycoplasma species for sequencing
|
16S rRNA
|
UP
|
ACTCCTACGGGAGGCAGCAGTA
|
700
|
Yoshida et al. (2002)
|
DN
|
TGCACCATCTGTCACTCTGTTAACCTC
|
N. gonorrhoeae
|
porA pseudogene
|
UP
|
CGGTTTCCGTGCGTTACGA
|
132
|
Whiley et al. (2004)
|
DN
|
AACTGGTTTCATCTGATTACTTTCCA
|
FLU
|
CATTCAATTTGTTCCGAGTCAAAACAGC-6-FAM
|
LCRed
|
LCRed640-AGTCCGCCTATACGCCTGCTACTTTCAC-P
|
T. pallidum
|
polA
|
UP
|
GGTAGAAGGGAGGGCTAGTA
|
104
|
Heymans et al. (2010)
|
DN
|
CTAAGATCTCTATTTTCTATAGGTATGG
|
TaqMan probe
|
FAM-ACACAGCACTCGTCTTCAACTCC-BHQ1
|
RPPs gene
| |
UP
|
CCACCGAATCCTTTCTGGGC
|
245
|
This study
|
DN
|
ATCCGAAAATCTGCTGGGGTACT
|