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Table 1 Samples profile, phenotypic and molecular features and bioremediation analysis of mycobacterial isolates from Iranian ecosystems

From: Screening, isolation and molecular identification of biodegrading mycobacteria from Iranian ecosystems and analysis of their biodegradation activity

Sample profile Phenotypic features 16S rRNA analysis Biodegradation activity
Isolates Location (city) Province Source pH Temperature Opt. Tm Growth rate Semi quantitative catalase Tween 80 hydrolyses Tolerance of NaCl5% Pyrazinamidase Reduction of tellurite potassium Urease Runyon group Similarity (%) Base pair differences Identification
A (2, 12, 13) Khorramabad (Lorestan) River sediment/forest soil 7 8–14 35 R + + + + IV 99.69 4/1285 M. sacrum like PAHs/sodium sulfate
A28 Ahwaz (Khuzestan) River sediment 7.2 18 35 R + + + + IV 99.69 4/1285 M. sacrum like PAHs/sodium sulfate
A53 Fulad Shahr (Isfahan) Forest soil 7.4 30 30 R + + + IV 97.74 22/974 M. flavescens PAHs/crude oil
A82 Dorud (Lorestan) River sediment 7.2 25 30 R + + + IV 97.74 22/974 M. flavescens PAHs/crude oil
A (113, 88) Yazd (Yazd) Hospital water 7.4 14 30 R + + + IV 97.74 22/974 M. flavescens PAHs/crude oil
A38 Shazand (Markazi) Oil refinery soil 8.5 6 35 R + + + IV 100 0/1074 M. conceptionense Dibenzothiophene
A55 Abadan (Khuzestan) Oil refinery soil 7.6 24 25 R + + + + IV 99.9 1/1074 M. monacense PAHs/crude oil/pristan
A75 Isfahan (Isfahan) Porcelain wastewater 6.5 20 25 R + + + + IV 99.9 1/1074 M. monacense PAHs/crude oil/pristan
A6 Dezful (Khuzestan) Dam water 7.6 13 30 R + + + + IV 99.56 6/1378 M. vanbaalenii like PAHs
A16 Arak (Markazi) Salt Lake sediment 8 4 25 R + + IV 98.22 24/1352 M. gadium like Sodium sulfate
A4 Khorram abad (Lorestan) Land farm soil 7 14 25 R + + + + IV 99.48 7/1356 M. tusciae like PAHs
A23 Kish (Hormozgan) Sea sediment 7.9 20 30 R + + + IV 98.1 18/916 M. pallens like PAHs
A7 Isfahan (Isfahan) Hospital water 7.6 12 30 S + + II 99 9/960 M. cookii like
A15 Omidie (Khuzestan) Oil contaminated soil 6.4 25 25 R + + + + IV 99.9 1/1023 M. porcinum PAHs/crude oil/phenol
A18 Khorramabad (Lorestan) Hospital water 7.6 10 35 S + + + I 100 0/999 M simiae
A5 Bushehr (Bushehr) Sea sediment 7.2 24 30 R + + + + IV 100 0/872 M. fredriksbergense PAHs/crude oil
A9 Isfahan (Isfahan) River sediment 7.8 8 30 R + + + + IV 100 0/872 M. .fredriksbergense PAHs/crude oil
A8 Shahin Shahr (Isfahan) Oil refinery soil 8.3 18 30 R + + IV 99.4 4/663 M. celeriflavum PAHs
A14 Omidie (Khuzestan) Oil well sediments 6.9 20 25 R + + + + IV 99.2 11/1378 M. vaccae like PAHs/crude oil
A33 Bandar anzali (Gilan) River sediments 6.8 20 35 R + + + + + IV 99.7 3/983 M. novocastrense Sulfate sodium
A (24, A25, A52) Isfahan (Isfahan) Hospital water and soil 7–8.8 12–28 35 S + + II 99.6–99.9 1–4/995 M. paragordonae
A90 Shahr Kurd (kohkiloye) Hospital water 7.6 14 35 S + + II 99.9 1/995 M. paragordonae
A11 Dorud (Lorestan) Cement factory soil 6.8 14 35 R + + + + + IV 100 0/1044 M. aurum PAHs/PVC/morpholine/piperidin
A89 Kermanshah (Kermanshah) Petrochemical factory soil 7 16 35 R + + + + + IV 100 0/1044 M. aurum PAHs/PVC/morpholine/piperidin
A43 Hamadan (Hamadan) Power plant soil 8.5 6 35 R + + + + IV 99.12 11/1253 M. neoaurum PAHs/crude oil/pristan
A27 Kerman (Kerman) Sarcheshmeh copper mine soil 8.4 16 25 R + + + IV 99.63 4/1067 M. obuense PAHs/methoxy chloro ethane
A85 Chabahar (Sistan and balochestan) Sea sediments 7.4 14 35 R + + + IV 99.64 5/1385 M. phocaicum like PAHs/crude oil/fluoro-glycofen ethyl
A3 Ahwaz (Khuzestan) River sediments 7.8 16 35 R + + + IV 99.64 5/1385 M. phocaicum like PAHs/crude oil/fluoro-glycofen ethyl
A (44, 49) Khorramabad (Lorestan) Forest soil 7 –7.6 14–26 35 R + IV 98.56–100 0–12/1247 M. fortuitum Natural rubber/phenols/squalene
A63 Isfahan (Isfahan) Hospital water 7.4 16 35 R + IV 100 0/1247 M. fortuitum Natural rubber/phenols/squalene
A (69, 91) Najaf abad (Isfahan) Tile factory sewage 7.6 22 35 R + IV 98.56–100 0–12/1247 M. fortuitum Natural rubber/phenols/squalene
A115 Ramsar (Mazandaran) Forest soil 7 18 35 R + IV 98.88 6/1247 M. fortuitum Natural rubber/phenols/squalene
  1. Opt. Tm optimum temperature, Similarity % similarity to the nearest validated species, Base pair differences the number of nucleotide differences between the isolates and the nearest validated species, R resistance