TY - JOUR AU - Aliye, N. AU - Fabbretti, A. AU - Lupidi, G. AU - Tsekoa, T. AU - Spurio, R. PY - 2015 DA - 2015// TI - Engineering color variants of green fluorescent protein (GFP) for thermostability, pH-sensitivity, and improved folding kinetics JO - Appl Microbiol Biotechnol VL - 99 UR - https://doi.org/10.1007/s00253-014-5975-1 DO - 10.1007/s00253-014-5975-1 ID - Aliye2015 ER - TY - JOUR AU - Batra, N. AU - Singh, J. AU - Banerjee, U. C. AU - Patnaik, P. R. AU - Sobti, R. C. PY - 2002 DA - 2002// TI - Production and characterization of a thermostable beta-galactosidase from Bacillus coagulans RCS3 JO - Biotechnol Appl Biochem VL - 36 UR - https://doi.org/10.1042/BA20010091 DO - 10.1042/BA20010091 ID - Batra2002 ER - TY - JOUR AU - Bhandiwad, A. AU - Shaw, A. J. AU - Guss, A. AU - Guseva, A. AU - Bahl, H. AU - Lynd, L. R. PY - 2014 DA - 2014// TI - Metabolic engineering of Thermoanaerobacterium saccharolyticum for n-butanol production JO - Metab Eng VL - 21 UR - https://doi.org/10.1016/j.ymben.2013.10.012 DO - 10.1016/j.ymben.2013.10.012 ID - Bhandiwad2014 ER - TY - JOUR AU - Chalfie, M. AU - Tu, Y. AU - Euskirchen, G. AU - Ward, W. AU - Prasher, D. PY - 1994 DA - 1994// TI - Green fluorescent protein as a marker for gene expression JO - Science VL - 263 UR - https://doi.org/10.1126/science.8303295 DO - 10.1126/science.8303295 ID - Chalfie1994 ER - TY - JOUR AU - Chen, W. AU - Chen, H. AU - Xia, Y. AU - Zhao, J. AU - Tian, F. AU - Zhang, H. PY - 2008 DA - 2008// TI - Production, purification, and characterization of a potential thermostable galactosidase for milk lactose hydrolysis from Bacillus stearothermophilus JO - J Dairy Sci VL - 91 UR - https://doi.org/10.3168/jds.2007-617 DO - 10.3168/jds.2007-617 ID - Chen2008 ER - TY - JOUR AU - Cripps, R. E. AU - Eley, K. AU - Leak, D. J. AU - Rudd, B. AU - Taylor, M. AU - Todd, M. AU - Boakes, S. AU - Martin, S. AU - Atkinson, T. PY - 2009 DA - 2009// TI - Metabolic engineering of Geobacillus thermoglucosidasius for high yield ethanol production JO - Metab Eng VL - 398–408 ID - Cripps2009 ER - TY - JOUR AU - Daabrowski, S. AU - Sobiewska, G. AU - Maciunska, J. AU - Synowiecki, J. AU - Kur, J. PY - 2000 DA - 2000// TI - Cloning, expression, and purification of the His(6)-tagged thermostable beta-galactosidase from Pyrococcus woesei in Escherichia coli and some properties of the isolated enzyme JO - Protein Expr Purif VL - 19 UR - https://doi.org/10.1006/prep.2000.1231 DO - 10.1006/prep.2000.1231 ID - Daabrowski2000 ER - TY - JOUR AU - Dong, Y. N. AU - Liu, X. M. AU - Chen, H. Q. AU - Xia, Y. AU - Zhang, H. P. AU - Zhang, H. AU - Chen, W. PY - 2011 DA - 2011// TI - Enhancement of the hydrolysis activity of beta-galactosidase from Geobacillus stearothermophilus by saturation mutagenesis JO - J Dairy Sci VL - 94 UR - https://doi.org/10.3168/jds.2010-3775 DO - 10.3168/jds.2010-3775 ID - Dong2011 ER - TY - JOUR AU - Fisher, A. K. AU - Freedman, B. G. AU - Bevan, D. R. AU - Senger, R. S. PY - 2014 DA - 2014// TI - A review of metabolic and enzymatic engineering strategies for designing and optimizing performance of microbial cell factories JO - Comput Struct Biotechnol J VL - 11 UR - https://doi.org/10.1016/j.csbj.2014.08.010 DO - 10.1016/j.csbj.2014.08.010 ID - Fisher2014 ER - TY - JOUR AU - Geu-Flores, F. AU - Nour-Eldin, H. H. AU - Nielsen, M. T. AU - Halkier, B. A. PY - 2007 DA - 2007// TI - USER fusion: a rapid and efficient method for simultaneous fusion and cloning of multiple PCR products JO - Nucleic Acids Res VL - 35 UR - https://doi.org/10.1093/nar/gkm106 DO - 10.1093/nar/gkm106 ID - Geu-Flores2007 ER - TY - JOUR AU - Gilman, J. AU - Love, J. PY - 2016 DA - 2016// TI - Synthetic promoter design for new microbial chassis JO - Biochem Soc Trans VL - 44 UR - https://doi.org/10.1042/BST20160042 DO - 10.1042/BST20160042 ID - Gilman2016 ER - TY - JOUR AU - Hammer, K. AU - Mijakovic, I. AU - Jensen, P. R. PY - 2006 DA - 2006// TI - Synthetic promoter libraries—tuning of gene expression JO - Trends Biotechnol VL - 24 UR - https://doi.org/10.1016/j.tibtech.2005.12.003 DO - 10.1016/j.tibtech.2005.12.003 ID - Hammer2006 ER - TY - JOUR AU - Heuermann, K. AU - Cosgrove, J. PY - 2001 DA - 2001// TI - S-Gal (TM): an autoclavable dye for color selection of cloned DNA inserts JO - Biotechniques VL - 30 ID - Heuermann2001 ER - TY - STD TI - Jensen PR, Hammer K (1998a) Artificial promoter libraries for selected organisms and promoters derived from such libraries. WO1998007846, Feb 1998 ID - ref14 ER - TY - JOUR AU - Jensen, P. R. AU - Hammer, K. PY - 1998 DA - 1998// TI - The sequence of spacers between the consensus sequences modulates the strength of prokaryotic promoters JO - Appl Environ Microbiol VL - 64 ID - Jensen1998 ER - TY - JOUR AU - Kim, C. S. AU - Ji, E. S. AU - Oh, D. K. PY - 2004 DA - 2004// TI - Characterization of a thermostable recombinant beta-galactosidase from Thermotoga maritima JO - J Appl Microbiol VL - 97 UR - https://doi.org/10.1111/j.1365-2672.2004.02377.x DO - 10.1111/j.1365-2672.2004.02377.x ID - Kim2004 ER - TY - JOUR AU - Kishigami, S. AU - Komatsu, Y. AU - Takeda, H. AU - Nomura-Kitabayashi, A. AU - Yamauchi, Y. AU - Abe, K. AU - Yamamura, K. AU - Mishina, Y. PY - 2006 DA - 2006// TI - Optimized beta-galactosidase staining method for simultaneous detection of endogenous gene expression in early mouse embryos JO - Genesis VL - 44 UR - https://doi.org/10.1002/gene.20186 DO - 10.1002/gene.20186 ID - Kishigami2006 ER - TY - JOUR AU - Kiss, C. AU - Temirov, J. AU - Chasteen, L. AU - Waldo, G. S. AU - Bradbury, A. R. PY - 2009 DA - 2009// TI - Directed evolution of an extremely stable fluorescent protein JO - Protein Eng Des Sel VL - 22 UR - https://doi.org/10.1093/protein/gzp006 DO - 10.1093/protein/gzp006 ID - Kiss2009 ER - TY - JOUR AU - Klapatch, T. R. AU - Guerinot, M. L. AU - Lynd, L. R. PY - 1996 DA - 1996// TI - Electrotransformation of Clostridium thermosaccharolyticum JO - J Ind Microbiol VL - 16 UR - https://doi.org/10.1007/BF01570112 DO - 10.1007/BF01570112 ID - Klapatch1996 ER - TY - JOUR AU - Kuhad, R. C. AU - Singh, A. PY - 1993 DA - 1993// TI - Lignocellulose biotechnology: current and future prospects JO - Crit Rev Biotechnol VL - 13 UR - https://doi.org/10.3109/07388559309040630 DO - 10.3109/07388559309040630 ID - Kuhad1993 ER - TY - JOUR AU - Lind, D. L. AU - Daniel, R. M. AU - Cowan, D. A. AU - Morgan, H. W. PY - 1989 DA - 1989// TI - β-Galactosidase from a strain of the anaerobic thermophile, Thermoanaerobacter JO - Enzyme Microb Technol VL - 11 UR - https://doi.org/10.1016/0141-0229(89)90079-3 DO - 10.1016/0141-0229(89)90079-3 ID - Lind1989 ER - TY - CHAP AU - Mahoney, R. R. ED - Fox, P. F. PY - 1997 DA - 1997// TI - Lactose: enzymatic modification BT - Advanced dairy chemistry PB - Springer CY - New York ID - Mahoney1997 ER - TY - JOUR AU - Mai, V. AU - Wiegel, J. PY - 2000 DA - 2000// TI - Advances in development of a genetic system for Thermoanaerobacterium spp.: expression of genes encoding hydrolytic enzymes, development of a second shuttle vector, and integration of genes into the chromosome JO - Appl Environ Microbiol VL - 66 UR - https://doi.org/10.1128/AEM.66.11.4817-4821.2000 DO - 10.1128/AEM.66.11.4817-4821.2000 ID - Mai2000 ER - TY - JOUR AU - Mai, V. AU - Lorenz, W. W. AU - Wiegel, J. PY - 1997 DA - 1997// TI - Transformation of Thermoanaerobacterium sp. strain JW/SL-YS485 with plasmid pIKM1 conferring kanamycin resistance JO - FEMS Microbiol Lett VL - 148 UR - https://doi.org/10.1111/j.1574-6968.1997.tb10283.x DO - 10.1111/j.1574-6968.1997.tb10283.x ID - Mai1997 ER - TY - JOUR AU - Nakkharat, P. AU - Haltrich, D. PY - 2006 DA - 2006// TI - Lactose hydrolysis and formation of galactooligosaccharides by a novel immobilized beta-galactosidase from the thermophilic fungus Talaromyces thermophilus JO - Appl Biochem Biotechnol VL - 129 UR - https://doi.org/10.1385/ABAB:129:1:215 DO - 10.1385/ABAB:129:1:215 ID - Nakkharat2006 ER - TY - JOUR AU - Nour-Eldin, H. H. AU - Hansen, B. G. AU - Norholm, M. H. AU - Jensen, J. K. AU - Halkier, B. A. PY - 2006 DA - 2006// TI - Advancing uracil-excision based cloning towards an ideal technique for cloning PCR fragments JO - Nucleic Acids Res VL - 34 UR - https://doi.org/10.1093/nar/gkl635 DO - 10.1093/nar/gkl635 ID - Nour-Eldin2006 ER - TY - JOUR AU - Ohtsu, N. AU - Motoshima, H. AU - Goto, K. AU - Tsukasaki, F. AU - Matsuzawa, H. PY - 1998 DA - 1998// TI - Thermostable beta-galactosidase from an extreme thermophile, Thermus sp. A4: enzyme purification and characterization, and gene cloning and sequencing JO - Biosci Biotechnol Biochem VL - 62 UR - https://doi.org/10.1271/bbb.62.1539 DO - 10.1271/bbb.62.1539 ID - Ohtsu1998 ER - TY - JOUR AU - Otero, J. M. AU - Cimini, D. AU - Patil, K. R. AU - Poulsen, S. G. AU - Olsson, L. AU - Nielsen, J. PY - 2013 DA - 2013// TI - Industrial systems biology of Saccharomyces cerevisiae enables novel succinic acid cell factory JO - PLoS ONE VL - 8 UR - https://doi.org/10.1371/journal.pone.0054144 DO - 10.1371/journal.pone.0054144 ID - Otero2013 ER - TY - JOUR AU - Panesar, P. S. AU - Panesar, R. AU - Singh, R. S. AU - Kennedy, J. F. AU - Kumar, H. PY - 2006 DA - 2006// TI - Microbial production, immobilization and applications of β-d-galactosidase JO - J Chem Technol Biotechnol VL - 81 UR - https://doi.org/10.1002/jctb.1453 DO - 10.1002/jctb.1453 ID - Panesar2006 ER - TY - JOUR AU - Payton, M. A. PY - 1984 DA - 1984// TI - Production of ethanol by thermophilic bacteria JO - Trends Biotechnol VL - 2 UR - https://doi.org/10.1016/0167-7799(84)90032-5 DO - 10.1016/0167-7799(84)90032-5 ID - Payton1984 ER - TY - JOUR AU - Pessela, B. C. C. AU - Mateo, C. AU - Fuentes, M. AU - Vian, A. AU - García, J. L. AU - Carrascosa, A. V. AU - Guisán, J. M. AU - Fernández-Lafuente, R. PY - 2003 DA - 2003// TI - The immobilization of a thermophilic β-galactosidase on Sepabeads supports decreases product inhibition JO - Enzyme Microb Technol VL - 33 UR - https://doi.org/10.1016/S0141-0229(03)00120-0 DO - 10.1016/S0141-0229(03)00120-0 ID - Pessela2003 ER - TY - JOUR AU - Piatkevich, K. D. AU - Verkhusha, V. V. PY - 2011 DA - 2011// TI - Guide to red fluorescent proteins and biosensors for flow cytometry JO - Methods Cell Biol VL - 102 UR - https://doi.org/10.1016/B978-0-12-374912-3.00017-1 DO - 10.1016/B978-0-12-374912-3.00017-1 ID - Piatkevich2011 ER - TY - JOUR AU - Pogrebnyakov, I. AU - Jendresen, C. B. AU - Nielsen, A. T. PY - 2017 DA - 2017// TI - Genetic toolbox for controlled expression of functional proteins in Geobacillus spp JO - PLoS ONE VL - 12 UR - https://doi.org/10.1371/journal.pone.0171313 DO - 10.1371/journal.pone.0171313 ID - Pogrebnyakov2017 ER - TY - BOOK AU - Sambrook, J. AU - Russell, D. W. PY - 2001 DA - 2001// TI - Molecular cloning a laboratory manual PB - Cold Spring Harbor Laboratory Press CY - New York ID - Sambrook2001 ER - TY - JOUR AU - Schrogel, O. AU - Allmansberger, R. PY - 1997 DA - 1997// TI - Optimisation of the BgaB reporter system: determination of transcriptional regulation of stress responsive genes in Bacillus subtilis JO - FEMS Microbiol Lett VL - 153 UR - https://doi.org/10.1016/S0378-1097(97)00272-3 DO - 10.1016/S0378-1097(97)00272-3 ID - Schrogel1997 ER - TY - JOUR AU - Shaikh, S. A. AU - Khire, J. M. AU - Khan, M. I. PY - 1999 DA - 1999// TI - Characterization of a thermostable extracellular beta-galactosidase from a thermophilic fungus Rhizomucor sp JO - Biochim Biophys Acta VL - 1472 UR - https://doi.org/10.1016/S0304-4165(99)00138-5 DO - 10.1016/S0304-4165(99)00138-5 ID - Shaikh1999 ER - TY - JOUR AU - Shaw, A. J. AU - Podkaminer, K. K. AU - Desai, S. G. AU - Bardsley, J. S. AU - Rogers, S. R. AU - Thorne, P. G. AU - Hogsett, D. A. AU - Lynd, L. R. PY - 2008 DA - 2008// TI - Metabolic engineering of a thermophilic bacterium to produce ethanol at high yield JO - Proc Natl Acad Sci USA VL - 105 UR - https://doi.org/10.1073/pnas.0801266105 DO - 10.1073/pnas.0801266105 ID - Shaw2008 ER - TY - JOUR AU - Sheng, L. AU - Kovacs, K. AU - Winzer, K. AU - Zhang, Y. AU - Minton, N. P. PY - 2017 DA - 2017// TI - Development and implementation of rapid metabolic engineering tools for chemical and fuel production in Geobacillus thermoglucosidasius NCIMB 11955 JO - Biotechnol Biofuels VL - 10 UR - https://doi.org/10.1186/s13068-016-0692-x DO - 10.1186/s13068-016-0692-x ID - Sheng2017 ER - TY - BOOK AU - Stephenson, F. H. PY - 2016 DA - 2016// TI - Protein calculations for molecular biology and biotechnology PB - Academic Press CY - Boston ID - Stephenson2016 ER - TY - JOUR AU - Suzuki, H. AU - Yoshida, K. AU - Ohshima, T. PY - 2013 DA - 2013// TI - Polysaccharide-degrading thermophiles generated by heterologous gene expression in Geobacillus kaustophilus HTA426 JO - Appl Environ Microbiol VL - 79 UR - https://doi.org/10.1128/AEM.01506-13 DO - 10.1128/AEM.01506-13 ID - Suzuki2013 ER - TY - JOUR AU - Taylor, M. P. AU - Esteban, C. D. AU - Leak, D. J. PY - 2008 DA - 2008// TI - Development of a versatile shuttle vector for gene expression in Geobacillus spp JO - Plasmid VL - 60 UR - https://doi.org/10.1016/j.plasmid.2008.04.001 DO - 10.1016/j.plasmid.2008.04.001 ID - Taylor2008 ER - TY - JOUR AU - Thielges, M. C. AU - Chung, J. K. AU - Axup, J. Y. AU - Fayer, M. D. PY - 2011 DA - 2011// TI - Influence of histidine tag attachment on picosecond protein dynamics JO - Biochemistry VL - 50 UR - https://doi.org/10.1021/bi2003923 DO - 10.1021/bi2003923 ID - Thielges2011 ER - TY - JOUR AU - Ulrich, J. T. AU - Temple, K. L. AU - Mcfeters, G. A. PY - 1972 DA - 1972// TI - Induction and characterization of beta-galactosidase in an extreme thermophile JO - J Bacteriol VL - 110 ID - Ulrich1972 ER - TY - JOUR AU - Veen, D. AU - Lo, J. AU - Brown, S. D. AU - Johnson, C. M. AU - Tschaplinski, T. J. AU - Martin, M. AU - Engle, N. L. AU - Berg, R. A. AU - Argyros, A. D. AU - Caiazza, N. C. AU - Guss, A. M. AU - Lynd, L. R. PY - 2013 DA - 2013// TI - Characterization of Clostridium thermocellum strains with disrupted fermentation end-product pathways JO - J Ind Microbiol Biotechnol VL - 40 UR - https://doi.org/10.1007/s10295-013-1275-5 DO - 10.1007/s10295-013-1275-5 ID - Veen2013 ER - TY - JOUR AU - Welsch, N. AU - Homuth, G. AU - Schweder, T. PY - 2012 DA - 2012// TI - Suitability of different beta-galactosidases as reporter enzymes in Bacillus subtilis JO - Appl Microbiol Biotechnol VL - 93 UR - https://doi.org/10.1007/s00253-011-3645-0 DO - 10.1007/s00253-011-3645-0 ID - Welsch2012 ER - TY - JOUR AU - Wiegel, J. AU - Ljungdahl, L. G. PY - 1986 DA - 1986// TI - The importance of thermophilic bacteria in biotechnology JO - Crit Rev Biotechnol VL - 3 UR - https://doi.org/10.3109/07388558509150780 DO - 10.3109/07388558509150780 ID - Wiegel1986 ER - TY - JOUR AU - Woolston, B. M. AU - Edgar, S. AU - Stephanopoulos, G. PY - 2013 DA - 2013// TI - Metabolic engineering: past and future JO - Annu Rev Chem Biomol Eng VL - 4 UR - https://doi.org/10.1146/annurev-chembioeng-061312-103312 DO - 10.1146/annurev-chembioeng-061312-103312 ID - Woolston2013 ER - TY - JOUR AU - Yanisch-perron, C. AU - Vieira, J. AU - Messing, J. PY - 1985 DA - 1985// TI - Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors JO - Gene VL - 33 UR - https://doi.org/10.1016/0378-1119(85)90120-9 DO - 10.1016/0378-1119(85)90120-9 ID - Yanisch-perron1985 ER - TY - JOUR AU - Yuan, G. AU - Wong, S. L. PY - 1995 DA - 1995// TI - Regulation of groE expression in Bacillus subtilis: the involvement of the sigma A-like promoter and the roles of the inverted repeat sequence (CIRCE) JO - J Bacteriol VL - 177 UR - https://doi.org/10.1128/jb.177.19.5427-5433.1995 DO - 10.1128/jb.177.19.5427-5433.1995 ID - Yuan1995 ER - TY - JOUR AU - Zeikus, J. G. AU - Vieille, C. AU - Savchenko, A. PY - 1998 DA - 1998// TI - Thermozymes: biotechnology and structure-function relationships JO - Extremophiles VL - 2 UR - https://doi.org/10.1007/s007920050058 DO - 10.1007/s007920050058 ID - Zeikus1998 ER - TY - JOUR AU - Zhang, X. G. AU - Bremer, H. PY - 1995 DA - 1995// TI - Control of the Escherichia coli rrnB P1 promoter strength by ppGpp JO - J Biol Chem VL - 270 UR - https://doi.org/10.1074/jbc.270.19.11181 DO - 10.1074/jbc.270.19.11181 ID - Zhang1995 ER -