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Table 3 The new pMMO primers designed based on aligned pmoC, A, and B compared to pmoA189

From: Survey of methanotrophic diversity in various ecosystems by degenerate methane monooxygenase gene primers

Primers

Sequence

MT

%GC

PmoC374

5′-AGCARGACGGYACNTGGC-3′

42,9

56

PmoA189

5′-GGNGACTGGGACTTCTGG-3′

40,3

56

PmoA344

5′-ANGTCCAHCCCCAGAAGT-3′

42,9

50

  1. MT melting temperature, %GC GC content in percentage